Datasets:
enoriega
/
biocreative_gene_mention

Dataset card Data Studio Files Community
tokens
sequence
folded_tokens
sequence
tags
sequence
labels
sequence
[ "Constitutive", "protection", "of", "E2F", "recognition", "sequences", "in", "the", "human", "thymidine", "kinase", "promoter", "during", "cell", "cycle", "progression", "." ]
[ "constitutive", "protection", "of", "e2f", "recognition", "sequence", "in", "the", "human", "thymidine", "kinase", "promoter", "during", "cell", "cycle", "progression", "." ]
[ 8, 7, 20, 7, 7, 35, 20, 2, 8, 7, 7, 7, 20, 7, 7, 7, 15 ]
[ 2, 2, 2, 0, 1, 1, 2, 2, 0, 1, 1, 1, 2, 2, 2, 2, 2 ]
[ "Comparison", "of", "genomic", "sequence", "shows", "that", "the", "ph", "locus", "has", "been", "duplicated", ",", "and", "that", "it", "contains", "proximal", "and", "distal", "transcription", "units", "." ]
[ "comparison", "of", "genomic", "sequence", "show", "that", "the", "ph", "locus", "have", "be", "duplicated", ",", "and", "that", "it", "contain", "proximal", "and", "distal", "transcription", "unit", "." ]
[ 7, 20, 8, 7, 9, 20, 2, 7, 7, 9, 28, 8, 16, 30, 20, 18, 9, 8, 30, 8, 7, 35, 15 ]
[ 2, 2, 2, 2, 2, 2, 2, 0, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]
[ "The", "ZnF20", "cDNA", "hybridized", "to", "multiple", "transcripts", "in", "a", "thyroid", "cancer", "cell", "line", "(", "8.0", ",", "4.5", "and", "2", "kb", ")", "that", "increased", "after", "cycloheximide", "treatment", "and", "decayed", "<", "2", "h", "after", "addition", "of", "actinomycin", "D." ]
[ "the", "znf20", "cdna", "hybridize", "to", "multiple", "transcript", "in", "a", "thyroid", "cancer", "cell", "line", "(", "8.0", ",", "4.5", "and", "2", "kb", ")", "that", "increase", "after", "cycloheximide", "treatment", "and", "decayed", "<", "2", "h", "after", "addition", "of", "actinomycin", "D." ]
[ 2, 7, 7, 21, 24, 8, 35, 20, 2, 7, 7, 7, 7, 7, 39, 16, 39, 30, 39, 7, 7, 33, 21, 20, 7, 7, 30, 8, 41, 39, 7, 20, 7, 20, 7, 36 ]
[ 2, 0, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]
[ "Glutathione", "S-transferase", "(", "GST", ")", "-", "E2F", "and", "GST-DP", "fusion", "proteins", "were", "found", "to", "cooperate", "in", "binding", "to", "the", "three", "E2F", "sites", "in", "the", "DNA", "polymerase", "alpha", "gene", "promoter", "in", "vitro", "." ]
[ "glutathione", "s-transferase", "(", "gst", ")", "-", "e2f", "and", "gst-dp", "fusion", "protein", "be", "find", "to", "cooperate", "in", "bind", "to", "the", "three", "e2f", "site", "in", "the", "dna", "polymerase", "alpha", "gene", "promoter", "in", "vitro", "." ]
[ 7, 7, 39, 7, 38, 40, 7, 30, 7, 7, 35, 21, 28, 24, 22, 20, 14, 24, 2, 39, 7, 35, 20, 2, 7, 7, 7, 7, 7, 11, 11, 15 ]
[ 0, 1, 2, 0, 2, 2, 0, 2, 0, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 2, 2, 0, 1, 1, 1, 1, 2, 2, 2 ]
[ "Two", "sterol", "regulatory", "element", "like", "sequences", "mediate", "up-regulation", "of", "caveolin", "gene", "transcription", "in", "response", "to", "low", "density", "lipoprotein", "free", "cholesterol", "." ]
[ "two", "sterol", "regulatory", "element", "like", "sequence", "mediate", "up-regulation", "of", "caveolin", "gene", "transcription", "in", "response", "to", "low", "density", "lipoprotein", "free", "cholesterol", "." ]
[ 39, 8, 8, 7, 20, 35, 10, 7, 20, 7, 7, 7, 20, 7, 24, 8, 7, 7, 8, 7, 15 ]
[ 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 2, 2, 2, 2, 0, 1, 1, 2, 2, 2 ]
[ "Furthermore", ",", "DNA", "bound", "LAZ3", "/", "BCL6", "recruits", "SMRT", "in", "vivo", ",", "and", "both", "overexpressed", "proteins", "completely", "colocalize", "in", "nuclear", "dots", "." ]
[ "furthermore", ",", "dna", "bind", "laz3", "/", "bcl6", "recruit", "SMRT", "in", "vivo", ",", "and", "both", "overexpressed", "protein", "completely", "colocalize", "in", "nuclear", "dot", "." ]
[ 26, 16, 7, 21, 7, 40, 7, 9, 36, 11, 11, 16, 30, 2, 8, 35, 26, 10, 20, 8, 35, 15 ]
[ 2, 2, 2, 2, 0, 2, 0, 2, 0, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]
[ "CONCLUSIONS", ":", "We", "obtained", "normal", "EPO", "levels", "for", "mothers", "and", "newborns", "for", "our", "area", ",", "similarly", "to", "the", "previously", "described", "ones", "." ]
[ "conclusion", ":", "we", "obtain", "normal", "epo", "level", "for", "mother", "and", "newborn", "for", "we", "area", ",", "similarly", "to", "the", "previously", "describe", "one", "." ]
[ 35, 40, 18, 21, 8, 7, 35, 20, 35, 30, 35, 20, 17, 7, 16, 26, 24, 2, 26, 28, 35, 15 ]
[ 2, 2, 2, 2, 2, 0, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]
[ "Direct", "proof", "that", "the", "heightened", "renal", "cellular", "apoptosis", "in", "PKD", "is", "not", "occurring", "through", "p53", "was", "obtained", "by", "successive", "matings", "between", "SBM", "and", "p53", "(-/-", ")", "mice", "." ]
[ "direct", "proof", "that", "the", "heighten", "renal", "cellular", "apoptosis", "in", "pkd", "be", "not", "occur", "through", "p53", "be", "obtain", "by", "successive", "mating", "between", "SBM", "and", "p53", "(-/-", ")", "mouse", "." ]
[ 8, 7, 20, 2, 28, 8, 8, 7, 20, 7, 9, 26, 14, 20, 7, 21, 28, 20, 8, 35, 20, 36, 30, 7, 39, 7, 35, 15 ]
[ 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 2, 2, 2, 2, 2, 2, 2, 2, 0, 2, 2, 2, 2 ]
[ "Accumulated", "evidence", "indicates", "that", ",", "upon", "stimulation", "with", "interferon-gamma", "(", "IFN-gamma", ")", ",", "three", "beta-type", "subunits", ",", "designated", "LMP2", ",", "LMP7", ",", "and", "PSMB10", ",", "are", "incorporated", "into", "the", "20S", "proteasome", "by", "displacing", "the", "housekeeping", "beta-type", "subunits", "designated", "PSMB6", ",", "PSMB5", ",", "and", "PSMB7", ",", "respectively", "." ]
[ "accumulate", "evidence", "indicate", "that", ",", "upon", "stimulation", "with", "interferon-gamma", "(", "ifn-gamma", ")", ",", "three", "beta-type", "subunit", ",", "designate", "lmp2", ",", "lmp7", ",", "and", "psmb10", ",", "be", "incorporate", "into", "the", "20", "proteasome", "by", "displace", "the", "housekeeping", "beta-type", "subunit", "designate", "psmb6", ",", "psmb5", ",", "and", "psmb7", ",", "respectively", "." ]
[ 28, 7, 9, 20, 16, 20, 7, 20, 7, 39, 7, 7, 16, 39, 8, 35, 16, 28, 7, 16, 7, 16, 30, 7, 16, 10, 28, 20, 2, 7, 7, 20, 14, 2, 8, 8, 35, 28, 7, 16, 7, 16, 30, 7, 16, 26, 15 ]
[ 2, 2, 2, 2, 2, 2, 2, 2, 0, 2, 0, 2, 2, 2, 2, 2, 2, 2, 0, 2, 0, 2, 2, 0, 2, 2, 2, 2, 2, 0, 1, 2, 2, 2, 2, 2, 2, 2, 0, 2, 0, 2, 2, 0, 2, 2, 2 ]
[ "The", "major", "RNase", "E", "cleavage", "product", "(", "denoted", "pSok-6", ")", "is", "rapidly", "degraded", "by", "polynucleotide", "phosphorylase", "(", "PNPase", ")", "." ]
[ "the", "major", "rnase", "e", "cleavage", "product", "(", "denote", "psok-6", ")", "be", "rapidly", "degrade", "by", "polynucleotide", "phosphorylase", "(", "pnpase", ")", "." ]
[ 2, 8, 7, 7, 7, 7, 39, 28, 7, 7, 9, 26, 28, 20, 7, 7, 39, 7, 7, 15 ]
[ 2, 2, 0, 1, 2, 2, 2, 2, 0, 2, 2, 2, 2, 2, 0, 1, 2, 0, 2, 2 ]
[ "This", "difference", "may", "result", "from", "the", "lower", "match", "to", "the", "ARG", "box", "consensus", "of", "the", "O", "(", "rocD", ")", "site", "." ]
[ "this", "difference", "may", "result", "from", "the", "lower", "match", "to", "the", "arg", "box", "consensus", "of", "the", "o", "(", "rocd", ")", "site", "." ]
[ 2, 7, 13, 22, 20, 2, 41, 7, 24, 2, 7, 7, 7, 20, 2, 7, 39, 7, 7, 7, 15 ]
[ 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 1, 1, 1, 2 ]
[ "The", "data", "provide", "evidence", "both", "for", "a", "signal", "transduction", "pathway", "independent", "of", "JNK", ",", "ERK", ",", "and", "p38", "MAP", "kinase", "to", "be", "involved", "in", "the", "induction", "of", "rhoB", "by", "genotoxic", "stress", ",", "and", "furthermore", ",", "indicate", "autoregulation", "of", "rhoB", "." ]
[ "the", "datum", "provide", "evidence", "both", "for", "a", "signal", "transduction", "pathway", "independent", "of", "jnk", ",", "erk", ",", "and", "p38", "map", "kinase", "to", "be", "involve", "in", "the", "induction", "of", "rhob", "by", "genotoxic", "stress", ",", "and", "furthermore", ",", "indicate", "autoregulation", "of", "rhob", "." ]
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[ "In", "an", "effort", "to", "separate", "domains", "of", "FadR", "required", "for", "DNA", "binding", ",", "dimerization", ",", "and", "ligand", "binding", ",", "chimeric", "protein", "fusions", "between", "the", "DNA", "binding", "domain", "of", "LexA", "and", "different", "regions", "of", "FadR", "were", "constructed", "." ]
[ "in", "a", "effort", "to", "separate", "domain", "of", "fadr", "require", "for", "dna", "binding", ",", "dimerization", ",", "and", "ligand", "binding", ",", "chimeric", "protein", "fusion", "between", "the", "dna", "binding", "domain", "of", "lexa", "and", "different", "region", "of", "fadr", "be", "construct", "." ]
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[ "Inhibition", "appears", "to", "result", "from", "titration", "of", "general", "transcription", "factors", "because", "MDM2", "overexpression", "inhibits", "c-fos", "as", "well", "as", "other", "promoters", "in", "vivo", "and", "basal", "transcription", "in", "vitro", "." ]
[ "inhibition", "appear", "to", "result", "from", "titration", "of", "general", "transcription", "factor", "because", "mdm2", "overexpression", "inhibit", "c-fo", "as", "well", "as", "other", "promoter", "in", "vivo", "and", "basal", "transcription", "in", "vitro", "." ]
[ 7, 9, 24, 22, 20, 7, 20, 8, 7, 35, 20, 7, 7, 9, 7, 26, 26, 20, 8, 35, 11, 11, 30, 8, 7, 11, 11, 15 ]
[ 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 2, 2, 0, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]
[ "4", ")", "PU", "and", "PD", "lacked", "the", "canonical", "TATA", "or", "CAAT", "motifs", ",", "and", "are", "AT", "rich", "." ]
[ "4", ")", "pu", "and", "pd", "lack", "the", "canonical", "ta", "or", "caat", "motif", ",", "and", "be", "at", "rich", "." ]
[ 39, 39, 7, 30, 7, 21, 2, 8, 7, 30, 7, 35, 16, 30, 10, 20, 8, 15 ]
[ 2, 2, 0, 2, 0, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]
[ "We", "also", "show", "by", "immunogold", "electron", "microscopy", "immunocytochemistry", "that", "amphiphysin", "I", "is", "localized", "in", "the", "nerve", "terminal", "cytomatrix", "and", "is", "partially", "associated", "with", "endocytic", "intermediates", "." ]
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[ 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]
[ "The", "mobility", "shift", "of", "both", "of", "these", "proteins", "is", "abolished", "by", "treatment", "with", "inhibitors", "of", "PKC", "or", "mitogen", "activated", "protein", "kinase", "/", "extracellular", "signal", "related", "kinase", "kinase", "." ]
[ "the", "mobility", "shift", "of", "both", "of", "these", "protein", "be", "abolish", "by", "treatment", "with", "inhibitor", "of", "pkc", "or", "mitogen", "activated", "protein", "kinase", "/", "extracellular", "signal", "related", "kinase", "kinase", "." ]
[ 2, 7, 7, 20, 2, 20, 2, 35, 9, 28, 20, 7, 20, 35, 20, 7, 30, 7, 8, 7, 7, 40, 8, 7, 8, 7, 7, 15 ]
[ 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 2, 0, 1, 1, 1, 2, 0, 1, 1, 1, 1, 2 ]
[ "Thus", ",", "Hex", "expression", "marks", "the", "earliest", "unequivocal", "molecular", "anteroposterior", "asymmetry", "in", "the", "mouse", "embryo", "and", "indicates", "that", "the", "anteroposterior", "axis", "of", "the", "embryo", "develops", "from", "conversion", "of", "a", "proximodistal", "asymmetry", "established", "in", "the", "primitive", "endoderm", "lineage", "." ]
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[ "Thus", ",", "dpp", "and", "omb", "promote", "both", "dorsal", "leg", "cell", "fate", "as", "well", "as", "transdetermination-competent", "leg", "disc", "cells", "." ]
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