Datasets:
enoriega
/
biocreative_gene_mention

Dataset card Data Studio Files Community
tokens
sequence
folded_tokens
sequence
tags
sequence
labels
sequence
[ "Electrophoretic", "mobility", "shift", "assays", "and", "competition", "experiments", "showed", "that", "site", "A", "is", "recognized", "by", "an", "NF1", "protein", "." ]
[ "electrophoretic", "mobility", "shift", "assay", "and", "competition", "experiment", "show", "that", "site", "a", "be", "recognize", "by", "a", "nf1", "protein", "." ]
[ 8, 7, 7, 35, 30, 7, 35, 21, 20, 7, 7, 9, 28, 20, 2, 7, 7, 15 ]
[ 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 2 ]
[ "Examination", "of", "the", "MMP-2", "RE1", "sequence", "revealed", "an", "incomplete", "Y-box", "sequence", "(", "CTGCTGGGCAAG", ")", ",", "which", "specifically", "interacted", "with", "recombinant", "YB-1", "on", "DMS", "protection", "footprinting", "analysis", "." ]
[ "examination", "of", "the", "mmp-2", "re1", "sequence", "reveal", "a", "incomplete", "y-box", "sequence", "(", "ctgctgggcaag", ")", ",", "which", "specifically", "interact", "with", "recombinant", "yb-1", "on", "dm", "protection", "footprinting", "analysis", "." ]
[ 7, 20, 2, 7, 7, 7, 21, 2, 8, 7, 7, 7, 7, 39, 16, 33, 26, 21, 20, 8, 7, 20, 7, 7, 7, 7, 15 ]
[ 2, 2, 2, 0, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 2, 2, 2, 2, 2, 2 ]
[ "Hence", ",", "scs32", "only", "partially", "suppressed", "the", "ts", "phenotype", "and", "was", "unable", "to", "suppress", "the", "Ino-phenotype", "of", "rpo26-31", "." ]
[ "hence", ",", "scs32", "only", "partially", "suppress", "the", "t", "phenotype", "and", "be", "unable", "to", "suppress", "the", "ino-phenotype", "of", "rpo26-31", "." ]
[ 26, 16, 7, 26, 26, 21, 2, 35, 7, 30, 21, 8, 24, 22, 2, 7, 20, 7, 15 ]
[ 2, 2, 0, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 2 ]
[ "In", "contrast", ",", "both", "Sp1", "and", "ETS", "proteins", "are", "required", "to", "bring", "about", "full", "promoter", "activity", "in", "the", "Surf-1", "direction", "." ]
[ "in", "contrast", ",", "both", "sp1", "and", "et", "protein", "be", "require", "to", "bring", "about", "full", "promoter", "activity", "in", "the", "surf-1", "direction", "." ]
[ 20, 7, 16, 30, 7, 30, 7, 35, 10, 28, 24, 22, 26, 8, 7, 7, 20, 2, 7, 7, 15 ]
[ 2, 2, 2, 2, 0, 2, 0, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 2, 2 ]
[ "We", "have", "subcloned", "into", "pBR322", "deoxyribonucleic", "acid", "(", "DNA", ")", "sequences", "mapping", "either", "in", "the", "coding", "region", ",", "the", "5", "'", "spacer", ",", "or", "the", "3", "'", "spacer", "of", "the", "H2B", "histone", "gene", "." ]
[ "we", "have", "subclon", "into", "pbr322", "deoxyribonucleic", "acid", "(", "dna", ")", "sequence", "map", "either", "in", "the", "code", "region", ",", "the", "5", "'", "spacer", ",", "or", "the", "3", "'", "spacer", "of", "the", "h2b", "histone", "gene", "." ]
[ 18, 10, 28, 20, 7, 8, 7, 7, 7, 7, 35, 14, 30, 20, 2, 14, 7, 16, 2, 39, 3, 7, 16, 30, 2, 39, 3, 7, 20, 2, 7, 7, 7, 15 ]
[ 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 1, 2 ]
[ "The", "combination", "of", "hydralazine", "hydrochloride", "and", "isosorbide", "dinitrate", "also", "improves", "survival", ",", "but", "direct", "comparison", "of", "both", "regimens", "provided", "evidence", "for", "a", "less", "favourable", "effect", "than", "that", "of", "the", "ACE", "inhibitors", "." ]
[ "the", "combination", "of", "hydralazine", "hydrochloride", "and", "isosorbide", "dinitrate", "also", "improve", "survival", ",", "but", "direct", "comparison", "of", "both", "regimen", "provide", "evidence", "for", "a", "less", "favourable", "effect", "than", "that", "of", "the", "ace", "inhibitor", "." ]
[ 2, 7, 20, 7, 7, 30, 7, 7, 26, 9, 7, 16, 30, 8, 7, 20, 2, 35, 21, 7, 20, 2, 41, 8, 7, 20, 2, 20, 2, 7, 35, 15 ]
[ 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 2, 2 ]
[ "To", "address", "mechanisms", "that", "define", "interactions", "of", "Site", "II", "regulatory", "factors", "with", "this", "cell", "cycle", "control", "element", ",", "we", "have", "investigated", "these", "determinants", "of", "transcriptional", "regulation", "at", "the", "G1", "/", "S", "phase", "transition", "in", "FDC-P1", "hematopoietic", "progenitor", "cells", "." ]
[ "to", "address", "mechanism", "that", "define", "interaction", "of", "site", "ii", "regulatory", "factor", "with", "this", "cell", "cycle", "control", "element", ",", "we", "have", "investigate", "these", "determinant", "of", "transcriptional", "regulation", "at", "the", "g1", "/", "s", "phase", "transition", "in", "fdc-p1", "hematopoietic", "progenitor", "cell", "." ]
[ 24, 22, 35, 33, 10, 35, 20, 7, 39, 8, 35, 20, 2, 7, 7, 7, 7, 16, 18, 10, 28, 2, 35, 20, 8, 7, 20, 2, 7, 40, 7, 7, 7, 20, 7, 8, 7, 35, 15 ]
[ 2, 2, 2, 2, 2, 2, 2, 0, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]
[ "The", "goal", "of", "this", "study", "was", "to", "identify", "neuronal", "cell", "cultures", "that", "express", "RC3", "/", "neurogranin", ",", "to", "check", "whether", "they", "are", "sensitive", "to", "T3", ",", "and", "to", "examine", "the", "mechanism", "of", "regulation", "." ]
[ "the", "goal", "of", "this", "study", "be", "to", "identify", "neuronal", "cell", "culture", "that", "express", "rc3", "/", "neurogranin", ",", "to", "check", "whether", "they", "be", "sensitive", "to", "t3", ",", "and", "to", "examine", "the", "mechanism", "of", "regulation", "." ]
[ 2, 7, 20, 2, 7, 21, 24, 22, 8, 7, 35, 33, 10, 7, 40, 7, 16, 24, 22, 20, 18, 10, 8, 24, 7, 16, 30, 24, 22, 2, 7, 20, 7, 15 ]
[ 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 2, 0, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]
[ "Although", "previous", "data", "have", "suggested", "that", "Rev", "uses", "the", "same", "export", "pathway", "as", "uracil", "rich", "small", "nuclear", "RNAs", "and", "5S", "ribosomal", "RNA", ",", "the", "CTE", "seems", "to", "interact", "with", "evolutionarily", "conserved", "factors", "that", "are", "essential", "for", "cellular", "mRNA", "export", "." ]
[ "although", "previous", "datum", "have", "suggest", "that", "rev", "use", "the", "same", "export", "pathway", "as", "uracil", "rich", "small", "nuclear", "rna", "and", "5", "ribosomal", "rna", ",", "the", "CTE", "seem", "to", "interact", "with", "evolutionarily", "conserve", "factor", "that", "be", "essential", "for", "cellular", "mrna", "export", "." ]
[ 20, 8, 35, 10, 28, 20, 7, 9, 2, 8, 7, 7, 20, 7, 8, 8, 8, 35, 30, 7, 8, 7, 16, 2, 36, 9, 24, 22, 20, 26, 28, 35, 33, 10, 8, 20, 8, 7, 7, 15 ]
[ 2, 2, 2, 2, 2, 2, 0, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]
[ "Human", "Duo", "contains", "a", "guanine", "nucleotide", "exchange", "factor", "(", "GEF", ")", "domain", "that", "is", "likely", "to", "be", "rac1", "specific", ",", "a", "pleckstrin", "homology", "(", "PH", ")", "domain", "and", "spectrin", "like", "repeat", "units", "." ]
[ "human", "duo", "contain", "a", "guanine", "nucleotide", "exchange", "factor", "(", "gef", ")", "domain", "that", "be", "likely", "to", "be", "rac1", "specific", ",", "a", "pleckstrin", "homology", "(", "ph", ")", "domain", "and", "spectrin", "like", "repeat", "unit", "." ]
[ 8, 7, 9, 2, 7, 7, 7, 7, 39, 7, 7, 7, 33, 9, 8, 24, 22, 7, 8, 16, 2, 7, 7, 39, 7, 7, 7, 30, 7, 20, 7, 35, 15 ]
[ 0, 1, 2, 2, 0, 1, 1, 1, 2, 0, 2, 2, 2, 2, 2, 2, 2, 0, 2, 2, 2, 0, 1, 2, 0, 2, 2, 2, 0, 1, 1, 1, 2 ]
[ "S2F", ",", "a", "leaf", "specific", "trans", "acting", "factor", ",", "binds", "to", "a", "novel", "cis", "acting", "element", "and", "differentially", "activates", "the", "RPL21", "gene", "." ]
[ "s2f", ",", "a", "leaf", "specific", "trans", "acting", "factor", ",", "bind", "to", "a", "novel", "ci", "act", "element", "and", "differentially", "activate", "the", "rpl21", "gene", "." ]
[ 7, 16, 2, 7, 8, 8, 8, 7, 16, 9, 24, 2, 8, 7, 14, 7, 30, 26, 9, 2, 7, 7, 15 ]
[ 0, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 2 ]
[ "ArgR", "was", "shown", "to", "be", "a", "dimer", "of", "two", "equal", "subunits", ",", "each", "with", "a", "molecular", "mass", "of", "37,000", "Da", "." ]
[ "argr", "be", "show", "to", "be", "a", "dimer", "of", "two", "equal", "subunit", ",", "each", "with", "a", "molecular", "mass", "of", "37,000", "da", "." ]
[ 7, 21, 28, 24, 22, 2, 7, 20, 39, 8, 35, 16, 2, 20, 2, 8, 7, 20, 39, 7, 15 ]
[ 0, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]
[ "Plasma", "leptin", "concentrations", "were", "higher", "in", "women", "than", "men", ",", "even", "after", "the", "adjustment", "for", "differences", "in", "fat", "mass", "(", "28", "+", "/-", "3", "ng", "/", "ml", "for", "women", "vs." ]
[ "plasma", "leptin", "concentration", "be", "higher", "in", "woman", "than", "man", ",", "even", "after", "the", "adjustment", "for", "difference", "in", "fat", "mass", "(", "28", "+", "/-", "3", "ng", "/", "ml", "for", "woman", "vs." ]
[ 7, 7, 35, 21, 41, 20, 35, 20, 35, 16, 26, 20, 2, 7, 20, 35, 20, 8, 7, 7, 39, 30, 39, 39, 7, 40, 7, 20, 35, 30 ]
[ 0, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]
[ "Consistent", "with", "effects", "on", "STAT", "activation", ",", "altered", "SHP-1", "expression", "also", "affected", "EGF", "induced", "activation", "of", "the", "mitogen", "activated", "protein", "kinase", "pathway", ";", "expression", "of", "SHP-1", "-", "(", "Cys", "--", ">", "Ser", ")", "inhibited", "activity", "of", "MEK", "by", "approximately", "25", "%", ",", "whereas", "expression", "of", "SHP-1", "resulted", "in", "a", "approximately", "25", "%", "increase", "." ]
[ "consistent", "with", "effect", "on", "stat", "activation", ",", "altered", "shp-1", "expression", "also", "affect", "egf", "induced", "activation", "of", "the", "mitogen", "activate", "protein", "kinase", "pathway", ";", "expression", "of", "shp-1", "-", "(", "cy", "--", ">", "ser", ")", "inhibit", "activity", "of", "mek", "by", "approximately", "25", "%", ",", "whereas", "expression", "of", "shp-1", "result", "in", "a", "approximately", "25", "%", "increase", "." ]
[ 8, 20, 35, 20, 7, 7, 16, 8, 7, 7, 26, 21, 7, 8, 7, 20, 2, 7, 28, 7, 7, 7, 40, 7, 20, 7, 40, 39, 7, 40, 41, 7, 39, 21, 7, 20, 7, 20, 26, 39, 7, 16, 20, 7, 20, 7, 21, 20, 2, 26, 39, 7, 7, 15 ]
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[ "This", "interaction", "involved", "the", "SH3", "region", "of", "p50", "(", "csk", ")", "and", "a", "proline", "rich", "region", "(", "PPPLPERTPESFVLADM", ")", "outside", "the", "catalytic", "region", "of", "PTP-PEST", "." ]
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[ 2, 7, 21, 2, 7, 7, 20, 7, 39, 7, 7, 30, 2, 7, 8, 7, 39, 36, 39, 20, 2, 8, 7, 20, 7, 15 ]
[ 2, 2, 2, 2, 0, 1, 2, 0, 2, 0, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 2 ]
[ "Following", "2.5", "Gy", ",", "HbO2", "changes", "were", "minimal", "." ]
[ "follow", "2.5", "gy", ",", "hbo2", "change", "be", "minimal", "." ]
[ 14, 39, 7, 16, 7, 35, 21, 8, 15 ]
[ 2, 2, 2, 2, 0, 2, 2, 2, 2 ]
[ "Polarised", "expression", "of", "human", "intestinal", "N-benzoyl-L-tyrosyl-p-aminobenzoic", "acid", "hydrolase", "(", "human", "meprin", ")", "alpha", "and", "beta", "subunits", "in", "Madin-Darby", "canine", "kidney", "cells", "." ]
[ "polarise", "expression", "of", "human", "intestinal", "n-benzoyl-l-tyrosyl-p-aminobenzoic", "acid", "hydrolase", "(", "human", "meprin", ")", "alpha", "and", "beta", "subunit", "in", "madin-darby", "canine", "kidney", "cell", "." ]
[ 28, 7, 20, 8, 8, 8, 7, 7, 39, 8, 7, 7, 7, 30, 7, 35, 20, 8, 8, 7, 35, 15 ]
[ 2, 2, 2, 2, 2, 0, 1, 1, 2, 0, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]
[ "Neither", "mutant", "exhibited", "derepression", "of", "the", "silent", "mating", "type", "loci", "." ]
[ "neither", "mutant", "exhibit", "derepression", "of", "the", "silent", "mating", "type", "locus", "." ]
[ 2, 8, 21, 7, 20, 2, 8, 7, 7, 35, 15 ]
[ 2, 2, 2, 2, 2, 2, 0, 1, 1, 1, 2 ]
[ "We", "established", "that", "the", "2.6", "kb", "mRNA", "V-1", "and", "the", "2.3", "kb", "GGT", "mRNA", "V-2", "derive", ",", "by", "alternate", "splicing", ",", "from", "a", "primary", "transcript", "initiated", "on", "a", "distal", "promoter", "on", "the", "rat", "GGT", "gene", "." ]
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[ 18, 21, 20, 2, 39, 7, 7, 7, 30, 2, 39, 7, 36, 7, 7, 10, 16, 20, 8, 7, 16, 20, 2, 8, 7, 28, 20, 2, 8, 7, 20, 2, 7, 36, 7, 15 ]
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[ "A", "specific", "distal", "promoter", "controls", "gamma-glutamyl", "transpeptidase", "gene", "expression", "in", "undifferentiated", "rat", "transformed", "liver", "cells", "." ]
[ "a", "specific", "distal", "promoter", "control", "gamma-glutamyl", "transpeptidase", "gene", "expression", "in", "undifferentiated", "rat", "transform", "liver", "cell", "." ]
[ 2, 8, 8, 7, 9, 7, 7, 7, 7, 20, 8, 7, 28, 7, 35, 15 ]
[ 2, 2, 2, 2, 2, 0, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2 ]
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[ 2, 7, 35, 10, 7, 8, 30, 10, 26, 24, 2, 7, 7, 7, 7, 39, 7, 7, 20, 7, 8, 35, 20, 28, 20, 7, 7, 40, 7, 35, 15 ]
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[ 20, 41, 7, 20, 7, 20, 36, 35, 16, 2, 7, 21, 28, 8, 24, 2, 8, 7, 7, 15 ]
[ 2, 2, 2, 2, 0, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 2 ]
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[ 20, 7, 24, 2, 8, 7, 16, 7, 20, 7, 7, 14, 2, 7, 7, 20, 2, 7, 8, 7, 7, 9, 24, 22, 7, 8, 7, 20, 8, 35, 15 ]
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[ 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 2, 2, 2, 2, 2 ]
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