Christina Theodoris's picture

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Christina Theodoris

ctheodoris

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new activity about 23 hours ago

ctheodoris/Geneformer:Splitting dataset

new activity 1 day ago

ctheodoris/Geneformer:median computation : gene_median_dictionary_gc95M

new activity 5 days ago

ctheodoris/Geneformer:Different N_Detections for OE or deletion of same gene with same dataset

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ctheodoris's activity

New activity in ctheodoris/Geneformer about 23 hours ago

Splitting dataset

#487 opened 1 day ago by

ZYSK-huggingface

New activity in ctheodoris/Geneformer 1 day ago

median computation : gene_median_dictionary_gc95M

#486 opened 5 days ago by

New activity in ctheodoris/Geneformer 5 days ago

Different N_Detections for OE or deletion of same gene with same dataset

#485 opened 5 days ago by

New activity in ctheodoris/Geneformer 6 days ago

Getting an runtime error when trying to predict of mismached shapes

#484 opened 6 days ago by

New activity in ctheodoris/Geneformer 7 days ago

Prepare data cell level pass cell state dict instead of genes

#483 opened 7 days ago by

gene_class_dict "NoneType object has no attribute 'items'"

#482 opened 7 days ago by

Is the order of word embeddings in a pretrained model the same as the order of token in the dictionary?

#481 opened 7 days ago by

[Rank value encoding] What kinds of normalization was done before calculating the non-zero median for genes?

#480 opened 7 days ago by

get_embs() method expects token names to be in token_gene_dict.values(), but are stored as keys

#479 opened 9 days ago by

New activity in ctheodoris/Geneformer 9 days ago

Cell SubTypes 47/ 53 classes : How?

#478 opened 12 days ago by

New activity in ctheodoris/Geneformer 11 days ago

Installation error

#474 opened 16 days ago by

Inquiry About PEFT Compatibility Issue

#466 opened about 1 month ago by

NameError: name 'LRScheduler' is not defined"

#467 opened about 1 month ago by

Clarification on `gene_class_dict` Format

#469 opened about 1 month ago by

New activity in ctheodoris/Genecorpus-30M 13 days ago

Wanted to know more information about the ranked sequence of input ids

#25 opened 14 days ago by

New activity in ctheodoris/Geneformer 13 days ago

AssertionError of extracts embedding from input data

#435 opened 4 months ago by

New activity in ctheodoris/Geneformer 14 days ago

Did something happen to the token_dictionary_gc95M.pkl?

#477 opened 14 days ago by

New activity in ctheodoris/Geneformer 15 days ago

Input to Model

#476 opened 15 days ago by

New activity in ctheodoris/Geneformer 16 days ago

Fix how mappings and train and val data are returned

#473 opened 18 days ago by

New activity in ctheodoris/Geneformer 20 days ago

"dedup" result errors when tokenizing

#471 opened 28 days ago by

ZYSK-huggingface