fuson_plm/benchmarking/README.md

Benchmarking

This outer directory for the benchmarks in FusOn-pLM has some utility functions stored in .py files.

embed.py

This file contains functions used to make and organize FusOn-pLM and ESM embeddings of benchmarking datasets. Its functions are used in all benchmarks.

xgboost_predictor.py

This file contains functions used to train XGBoost predictors, which are utilized in the puncta benchmark.