fuson_plm/benchmarking/README.md

# Benchmarking

This outer directory for the benchmarks in FusOn-pLM has some utility functions stored in `.py` files. 

### embed.py

This file contains functions used to make and organize FusOn-pLM and ESM embeddings of benchmarking datasets. Its functions are used in all benchmarks. 

### xgboost_predictor.py

This file contains functions used to train XGBoost predictors, which are utilized in the `puncta` benchmark.