tsantosh7/en_BiomedNER_EuropePMC

Bio literature Named Entity Recognition using microsoft/BiomedNLP-PubMedBERT-base-uncased-abstract-fulltext transformer model. The model recognises the following entities: CD: Chemical/Drugs, DS: Diseases, GP: Gene/Protein and OG: Organism

Feature	Description
Name	en_BiomedNER_EuropePMC
Version	1.0.0
spaCy	>=3.2.4,<3.3.0
Default Pipeline	transformer, ner
Components	transformer, ner
Vectors	0 keys, 0 unique vectors (0 dimensions)
Sources	n/a
License	n/a
Author	Santosh Tirunagari

Label Scheme

View label scheme (4 labels for 1 components)

Component	Labels
ner	CD, DS, GP, OG

Accuracy

Type	Score
ENTS_F	88.82
ENTS_P	87.14
ENTS_R	90.57
TRANSFORMER_LOSS	92291.81
NER_LOSS	109755.03