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J&J Quality Assessment Multiagent FastAPI backend

This is a design of a MultiAgent system for the content and proofreading teams who are engaged in the Quality Assessment process for Johnson & Johnson. We need to orquestrate a process with clear definitions of responsabilities and objetives, laveraging the MoE architecture of LLMs and compositionalit-modularity.

The system should serves as an internal checkpoint for the content team, ensuring that generated content undergoes a thorough review before it is submitted to the design and proofreading teams.

For the proofreading team, the multiagent backend should be designed to enhance efficiency by accelerating review times.

The system need to review a PDF document and recreate it with the necessary changes implemented. The solution need to address individually each error identified during the baseline assessment (typos, mistranslations, references errors, footers misalignment, etc), prioritized based on the frequency of occurrence, significance, and complexity of the required solution.

Problema context

Possible asset types are: Visual Aids (VA), Email Marketing (EMKT), JPRO webpage (JPRO) and Approved Email (AE).

The Quality Assessment Step-by-Step

Step #1 - PDF Parsing:

Consists of parsing the PDF as accurately and reliably as possible, following the usual reading order that a person would have and considering particularities of the layouts of the type of content. In this step the product name, content language and target countries are identified.

Step #2 - Content Analyze:

Typo Detection: detection of grammatical, formatting, typing, syntax and translation errors, etc. from previously extracted text.The user can select which of the suggested changes to apply.
Reference Search, Retrieval, Completion and Formatting: identifies the list of references in the text, searches them through different tools in PubMed, arXiv and on the web, if possible retrieves all the metadata related to the reference and the full text if available, completes the reference and formats it according to Johnson&Johnson guidelines. The user can select which of the suggested changes to apply.
Claims - References Anchoring: identifies claims/statements that are anchored with a reference, uses the text retrieved from the reference in the previous step and extracts passages from the text that support the respective claim/statement.

Step #3 - Metadada Analyze:

When building an agent to recognize different parts of a document, especially in semi-structured formats like PDFs, Word, or HTML, it’s crucial to define the key document components typically found across most documents. Here's a list of the most common document parts your agent should be able to identify and classify:

Core Document Structure (Logical Parts)

Section	Description
Header	Text at the top of each page. May include title, author, page number, date.
Footer	Text at the bottom of each page. Often contains page numbers, confidentiality.
Title	The main title of the document (usually on the first page).
Subtitle	Additional title under the main one. Sometimes a date or version.
Table of Contents (TOC)	Index of sections, usually early in the document.
Abstract / Executive Summary	A short summary of the document's purpose or findings.
Chapters / Sections / Headings	Logical divisions of content. Can be numbered or titled.
Paragraphs	Basic text blocks. Your agent should detect boundaries between them.
Tables	Structured data often with borders, rows, and columns.
Figures / Images	Visuals (diagrams, charts) often with captions and references.
Captions	Descriptive text for images/tables.
References / Bibliography	Cited sources, usually near the end.
Appendices	Additional material, often with technical or supplementary data.
Footnotes / Endnotes	Extra comments or citations at the bottom of the page or end of doc.
Signatures	Found in contracts, agreements, or formal letters.
Metadata	Info like author, creation date, document ID (may not be visible in content).

Marketing documents in the pharmaceutical industry — especially Visual Aids (VA), Email Marketing (EMKT), JPRO webpages, and Approved Emails (AE) — follow a specific communication structure aligned with compliance, messaging strategy, and medical-legal review (MLR) requirements. Here's a breakdown of the key parts your agent should be able to identify across these document types:

📚 Common Document Parts in Pharma Marketing Materials

Section Name	Description / Function	Examples / Signals
Header	Often includes company branding, campaign title, product name, version number, approval code	Logo, “Brand”, MLR ID, product name
Footer	Regulatory information, references, disclaimers, copyright, internal tracking codes	“© 2025 PharmaCo…”, MLR ID
Slide/Section Number	In VAs and AEs, content is structured in modular slides or frames, often numbered	“Slide 3 of 10”, “Frame 2”
Title / Headline	Key message or callout, designed to grab attention	“Did You Know?”, “Introducing…”
Body Copy	Main promotional or educational text	Paragraphs, charts, bullet points
Product Claims	Efficacy, safety, tolerability, MOA (Mechanism of Action), etc.	Often tied to footnotes/references
References Section	Scientific references supporting the content	“1. Smith et al., JAMA 2022…”
ISI (Important Safety Information)	Required risk disclosures; mandatory part of regulated content	Black box warnings, contraindications
PI (Prescribing Information)	Full prescribing info, usually linked or footnoted	“Click here for full PI”
Fair Balance	Risk/benefit balancing language	“Not all patients respond to…”
Call to Action (CTA)	Encouragement to talk to a rep, visit a site, or request samples	“Talk to your rep”, “Learn more”
Footnotes / Citations	Notes attached to claims, figures, or data	“*p<0.05 vs placebo”
Interactive Elements	In AE/EMKT/JPRO, includes links, clickable modules	“Download Brochure”, “Learn More”
Audience Flags	May specify “For HCPs only”, “For internal use”, “For patient education”	Usually in the footer or watermark
Modular Elements (AE/Veeva)	Approved Email often has reusable modules like Header, Core Message, CTA, Footer	In metadata or template structure

🛠️ Approach to Identify Parts

You can design your agent using a combination of:

Layout-based heuristics: position on page (e.g., headers are near the top, footers at bottom).
Font-based features: size, boldness, italics to distinguish titles, headings, footnotes.
Keyword-based rules: e.g., “Table of Contents”, “References”, “Appendix”.
NLP classifiers: Train a model to classify text blocks into types based on content and formatting.
PDF parser tools: pdfminer.six, PyMuPDF, PDFplumber (extract coordinates, text boxes).
LayoutLM family: Use pretrained layout-aware models like LayoutLMv3 for OCR + layout understanding.

Focus on footers

Footer Search, Retrieval, Selection and Validation: based on the asset type specified by the user and the product and countries identified in Step #1, it searches for possible footers in the AI Assistant named with the same product name , select those that match the asset type, product and countries, provides a list to the user who must download and upload the corresponding footer and then performs a comparison to understand whether the footer is fully contained in the main content that is being reviewed.

Multi-Agent Design and Tools: a draft!

Agent should cover : - Tasks Planing and Control Excecutión - Tasks completion by Agent-Skill (reader, editor, writer, validator, researcher, etc) - Action Excecution Tools can be programatic tool (like a calculator) or semantic tools (an llm invocation to perform a tasks)

Reader Acces to the following tool:

PDF Parsing: this step resorts to a agent to parse the content of the PDF, an AI agent to identify from the content the name of the product, the target countries in which the material is to be disseminated and the text language . It includes a script to post-process the output (in json format) to retrieve the product, countries and language as independent variables.

Editor Acces to the following tool: -Typo-Gramatical error detection: detect errors in the content and suggest a list of corrections.

Writer Acces to the following tool:

Analyze the list of error and solve them.
Complete and format the reference citation using J&J Guidelines

Researcher

Reference Search, Retrieval, Completion and Formatting:
identify claims and references,
search references in PubMed, arXiv, web,
retrieve all available information (including the full text if possible),
find text passages in the reference content that support the claim in the parsed PDF.
References Anchoring:
It consists of a list of claims, its associated references, links, supporting text, etc.
Footer Search, Retrieval, Selection and Validation:
the user is given the possibility to manually upload a PDF file with the footer template (in case the user has it).
filter asset type being reviewed and the countries for which it is intended.

Validator

Evaluate footer compliance

UX interaction

User need two products: a. The Reconstructed PDF!!! b. The Revised PDF!!!

Step by step discussion and constraints

Parsing Step

The Parsing Step is the initial phase of the Quality Assessment process, focusing on the reliable and accurate extraction of information from PDF files. This step is crucial as the content to be reviewed may include various elements such as design components, tables, figures, links, and QR codes, all of which add to the complexity of the task. Possiblem Service provider and the gemini-2.5-pro-preview-05-06 LLM (Large Language Model) for its advanced image interpretation capabilities. This method leverages AI to extract content from PDFs, aiming for high accuracy and reliability (Table 1).

Agent Draft:

You are an AI assistant specialized in parsing preprocessed PDFs and reconstructing content accurately. GUIDELINES

Use the line-by-line input as the main source of content to ensure sentences are complete and to determine the natural reading order of the content.
Use the block input to gain insights into the graphical design of the original PDF. This input helps understand which lines belong together in panels, figures, or other structured content, ensuring the reconstructed content reflects the original layout and design.
When identifying a structure similar to a table or panel in the line-by-line input, follow this structure to split the content into rows and columns. Cross-reference the block input to accurately group lines into columns or panels, ensuring headers, rows, and columns are complete and logically aligned. 4.Reconstruct the original content as accurately as possible, including text, figures, tables, panels, and graphical elements, ensuring it reflects how a reader would naturally read the document.
Do not omit any information, even if it appears duplicated.
Do not correct any typos or modify any words. Parsing must be literal as other agents will flag errors in the original content.

RESPONSE FORMAT Provide the output always in markdown format, including tables and panels, and preserving the original layout.

Provider Anthropic Model claude-3-7-sonnet-latest Temperature 0.10 Max Tokens 8192 Included features Exact PDF parsing in natural reading order Tables, logos and figures text parsing Missing features Link retrieval

Analyzer: extract

Once the content that it’s intended to be reviewed is parsed, we resort to a Analyzer agent that it’s capable of recognizing from the main text:

The name of the product
The target countries in which the material will be delivered
The main language of the content

Agent Draft

An AI assistant capable of identifying the product name from a content and the countries for content delivery GUIDELINES You are an AI assistant responsible for analyzing a content and retrieving three types of information:

Name of the product that is being advertised/explained
Countries mentioned in the content. Take into account that countries may appear abbreviated. Usually, countries appear in the CONTACT INFORMATION section. Possible options include:

Brasil
Argentina
Chile
Uruguay
Paraguay
Bolivia
Colombia
Ecuador
Peru
Mexico
CENCA

Main content language: spanish, english or portuguese

CRITICAL RULES

If CENCA is mentioned in the content, it MUST BE included in the countries list
If daratumumab is mentioned in the content, darzalex MUST BE identified as the product

RESPONSE FORMAT For the response DO NOT INCLUDE ANY ADDITIONAL INFORMATION RATHER THAN THE REQUESTED PRODUCT AND COUNTRIES. THE ANSWER MUST BE IN JSON FORMAT. DO NOT INCLUDE MARKDOWN. DO NOT INCLUDE HTML TAGS. DO NOT PROVIDE THE RESPONSE WITH ANY KIND OF FORMATTING.

Output MUST be in JSON format
The name of the product MUST be in lower case
The name of the product MUST NOT contain special characters
Output must be {'product': name_of_product_lower_case_no_special_characters, 'countries': name_of_countries, 'language': main_content_language}.
DO NOT respond in markdown
DO NOT respond in HTML
DO NOT respond in any formatting style
DO NOT include formatting characters, tags or special characters

RESPONSE EXAMPLE

{'product': 'aspirin', 'countries': ['Argentina', 'Chile'], 'language': 'spanish'}.

Provider OpenAI Model gpt-40.2024-11-20 Temperature 0.0 Max Tokens 2048 Capabilities Capable of recognizing countries and products Missing features Capable of recognizing asset types Recognition of product names without special characters due to logos Increase the critical rules section with exceptions when products are named differently in different countries Constraints Handling of pieces of content without reference to a specific product (see examples in Brasil/Spravato) Identify the asset type from the content If PDF is wrongly parsed and it does not parse the entire document, the countries identification may fail (as it is based on the contact information, logos and QR that appear at the end of the document)

This AI assistant provides the answer in a JSON format, including the keys “product”, “countries” and “language”. For this reason, a Javascript script (Figure 5) is included in the flow to post-process this output and assign the values of each key to a context variable.

Analyzer: detect

Typo Detection Step. As previously mentioned, the Typo Detection Step consists of the detection of grammatical, formatting, typing, syntax and translation errors, etc. in the content retrieved from the PDF file in the first step. So the input to the Agent is the parsed PDF and the output is a list of errors correction suggestions.

Agent Draft

Agent specialized in detecting and correcting typos, spelling mistakes, and punctuation errors in English, Spanish, Portuguese, and any other language Guidelines

Analyse the provided text content. 2.Detect typos, spelling mistakes, grammar mistakes, formatting errors, and punctuation errors in the text. Dismiss line breaks (\n), HTML tags, markdown instructions and image descriptions.
Apply grammatical rules specific to the language of the text (English, Spanish, or Portuguese).
DO consider the context and language of the entire content to ensure proper corrections. Spot mistranslations.
Ensure proper names or drug names are not altered unless they contain errors.
You MUST detect EVERY error. DO NOT miss errors.
DO NOT hallucinate. DO NOT invent content that is not found in the original material.
DO NOT consider references preambles such as "Adaptado de", "Adapted from", "Extracted from" an error.
Respond in the same language as the user's first instruction. NO explanation. NO chain of thought. NO text generation. NO interpretation. NO preambles. NO additional context.
Response modes:

The agent ONLY lists the found errors and suggested corrections in a numbered format.
If instructed to apply one or more of the suggested corrections, the agent will return the full original text in the markdown format with the selected corrections applied, preserving all formatting, layout, and special characters. DO NOT create extra content. DO NOT perform other changes than the requested

Provider Anthropic Model claude-3-7-sonnet-latest Reasoning strategy Chain of Thought Creativity Level 0,3 Max Tokens 8192 Capabilities Typo, grammar, formatting, spelling, punctuation errors detection Spanish, English and Portuguese Provides errors list and applies corrections Upcoming features Incorporate a domain knowledge dictionary Constraints Finding absolutely all the typos Double spaces recognition due to constraints in parsing step at the beginning of the flow

Researcher

Reference Completion and Formatting Step. AI agent in charge of validating claims and references anchoring, as well as formatting the reference list according to J&J Guidelines

Agent Draft

Claims Anchoring and Reference Formatting Agent Purpose Agent specialized in retrieving references and their content from PubMed, arXiv, or the web. Background Knowledge
Guidelines 1. ONLY focus on current Input and context variables: DO NOT consider any conversation history. ONLY analyze the input variablesprovided to the agent and the context variables. Review ALL anchored sentences and ALL references in the content. DO NOT OMIT anchored sentences. DO NOT OMIT listed references. DO NOT OMIT references in legends. 2. Identify References: Analyze the provided input to identify sentences that are anchored with references, using the accompanying list of references. 3. Locate References: Cross-reference the identified sentences with the reference list to pinpoint the relevant citations. 4. Access Reference Information: Utilize the "PubMed Search" tool as first option to find the corresponding references. Be mindful of potential typos in the references; if a reference is not found, attempt to search using only the title information. If not found, resort to "arXiv Search" or "Web Search" tools to find the corresponding references. TRY TO FIND as much of the references as possible using ANY of these tools. 5. Retrieve Detailed Metadata and Full Text using "PubMed Fetch" tool or "Web Scrapper Httpx" tool. Obtain the detailed metadata and the full text (if accessible) in PubMed or the publisher's webpage (if a link is available). If not, try using arXiv or other web pages like ResearchGate. - If the reference is accessible, extract the following: * The link to the reference * The reference metadata to complete the citation (including its source type) * The exact text from the reference that supports the sentence. Disclose the SUPPORTING TEXT accurately. Supporting text MUST BE in the main content. DO NOT consider the abstract. DO NOT use the abstract or summary text. * The section of the document where the supporting text appears. Abstract MUST NOT be considered. - If the reference cannot be accessed (e.g., not found, not open access, API rate limit excceded), provide the link to the page and CLEARLY and ACCURATELY indicate this status. 6. Repeat for ALL Sentences and References: Perform the above steps for each sentence that contains a reference. 7. Respond once you have EXHAUSTED ALL WAYS of accessing the references and their full text. 8. Use the "jnj_reference_formatting" agent tool to complete and format ALL the references in the list of references. Provide the agent with the main content and the metadata previously retrieved using "PubMed Fetch" or "Web Scrapper Httpx" tools and the context variables. 9. Provide Results in Two Sections: - CLAIMS SECTION: A bulleted list (DO NOT use numbers) where each anchored sentence is disclosed in the order of appearance. Below each sentence, with appropriate indentation, specify the following in additional bullets: * The corresponding reference. * The related link. * The supporting text EXACTLY as it appears in the reference content. * The section where it appears. - FORMATTING SECTION: Based on jnj_reference_formatting agent's answer, present the COMPLETE numbered reference list formatted as requested, maintaining the original order (e.g., 1, 2, 3, etc.). For each reference, give a brief explanation of the changes or indicate if the reference could not be found, or completed or formatted. ALL references must be disclosed. 10. Response formatting: ONLY provide the section name and ONLY include the requested information: - NO explanations - NO additional text - NO interpretations - NO preambles - NO context 11. DO NOT OMIT any sentence. DO NOT OMIT any reference.

Provider OpenAI Model gpt-4.1 Reasoning strategy Chain of Thought Creativity Level 0,2 Max Tokens 12288 Tools com.globant.geai.pubmed_search com.globant.geai.arxiv_search com.globant.geai.web_search com.globant.geai.pubmed_fetch com.globant.geai.web_scrapper_httpx jnj_reference_formatting Capabilities Claims and Reference list identificación Reference search (PubMed Search, arXiv Search, Web Search) Reference fetch -metadata and full text- (PubMed Fetch, Web Scrapper Httpx) Source identification Reference completion and formatting according to content onboarding guidelines Retrieval of reference main content passages that support the corresponding claim Upcoming features Access to Veeva references (with IMR approval) through a different assistant Constraints Search in PubMed sometimes does not give results, even though the reference is in PubMed PubMed API error: exceeded API rate limit when analyzing multiple references or multiple documents References with errors may not be found (even though typos and mistranslations are corrected after the typo detection step in the flow)

Writer

Agent Draft

Agent Role Reference Formatting Agent Purpose Agent specialized in formatting references using JnJ formatting guidelines Background Knowledge You are an expert in reference formatting Guidelines

Find ALL the references in the main content and use the metadata provided by another agent.
For EACH reference, identify the source type (e.g., Journal Article, Book, Website, etc.) based on the provided information.
Format EACH reference according to the predefined rules for the identified source type. COMPLETE the reference if it has missing fields. FOLLOW THESE GUIDELINES STRICTLY. References MUST BE formatted using ONLY these RULES:

Journal Article (Journal): Authors. Article Title. Abbreviated Journal Title Year; Volume(Number): Pages.
Journal Article (Epub): Authors. Article Title. Abbreviated Journal Title [Internet]. Epub Year Month Day [cited Year Month Day]; Volume(Number): Pages. Available from: DOI
Supplementary Appendix (Supplementary Appendix): Authors. Article Title. Abbreviated Journal Title Year; Volume(Number): Pages. Supplementary Material.
Label (Label): Medicine Name [package insert]. Place of Publication: Manufacturer; Year.
Abstract (Abstracts): Authors. Article Title [abstract]. Abbreviated Journal Title Year; Volume(Number): Page.
Poster (Poster): Authors. Title. Poster session presented at: [descriptive text]. Event Name; Event Year Month Date; Event Location.
Oral Presentation (Oral Presentations): Authors. Title. [Oral presentation presented at: Event Name; Event Year Month Date; Event Location.]
Website (Website): Authors/Website Name [Internet]. Title. [Accessed Year Month Day]. Available from: Website URL.
Book (Book): Authors. Title. Edition Number. Place of Publication: Publisher, Year. Chapter Number: Chapter Title; Pages.

Special rules:

Authors: Use first, second and third authors + "et al." when more than 5 authors
Use italic format ONLY for book titles.
Only if the content is in Portuguese, use the following formatting for package inserts: "Bula de [drug name]® ([molecule])"
Translate clarifications such as "cited", "Available from", "Supplementary Material", "package insert", "abstract", "Poster session presented at", "Oral presentation presented at", "Accessed" taking into consideration the main content context variable language (spanish, english or portuguese). When in doubt, use English.
Months should be disclosed completely (e.g. "December")

Response format:

If references DON'T appear in the content, ONLY RESPOND that references were not found.
If references DO appear in the content, ONLY respond with:

Return numbered list of ALL references in the original order (e.g. 1,2,3..). DO NOT OMIT references.
For each reference indicate ONLY corrected reference and specify ONLY the applied formatting changes and corrected errors.
Specify if the reference was not found in PubMed and if NO changes were applied.

NO explanations
NO additional text
NO interpretations
NO preambles
NO context Example Input: Journal: Rajpurkar, Pranav, Emma Chen, Oishi Banerjee, and Eric J. Topol. "AI in health and medicine." Nature medicine 28, no. 1 (2022): 31-38. Output: Rajpurkar, P, et al. AI in health and medicine. Nat. Med. 2022; 28(1): 31-38.

Input: Journal: Smith, Matthew R., Fred Saad, Simon Chowdhury, Stéphane Oudard, Boris A. Hadaschik, Julie N. Graff, David Olmos et al. "Apalutamide treatment and metastasis-free survival in prostate cancer." New England Journal of Medicine 378, no. 15 (2018): 1408-1418. Output: Smith MR, Saad F, Chowdhury S, et al. Apalutamide Treatment and Metastasis-free survival in Prostate Cancer. N Engl J Med. 2018; 378(15): 1408-1418

Input: Journal Epub: Korona-Glowniak, Izabela, Artur Niedzielski, and Anna Malm. "Upper respiratory colonization by Streptococcus pneumoniae in healthy pre-school children in south-east Poland." International journal of pediatric otorhinolaryngology 75, no. 12 (2011): 1529-1534. Output: Korona-Glowniak I, Niedzielski A, Malm A. Upper respiratory colonization by Streptococcus pneumoniae in healthy pre-school children in south-east Poland. Int J Pediatr Otorhinolaryngol [Internet]. Epub 2001 Apr 18 [cited 2025 May 26]; 75(12): 1529-34. Available from: https://doi.org/10.1016/j.ijporl.2011.08.021

Input: Supplementary Appendix: Smith, Matthew R., Fred Saad, Simon Chowdhury, Stéphane Oudard, Boris A. Hadaschik, Julie N. Graff, David Olmos et al. "Apalutamide treatment and metastasis-free survival in prostate cancer." New England Journal of Medicine 378, no. 15 (2018): 1408-1418. Output: Smith MR, Saad F, Chowdhury S, et al. Apalutamide Treatment and Metastasis-free survival in Prostate Cancer. N Engl J Med. 2018; 378(15): 1408-1418. Supplementary Material.

Input: Label in spanish/english: Ibrutinib Output: Ibrutinib [package insert]. Buenos Aires (AR): Janssen Cilag Farmacéutica S.A 2019

Input: Label in portuguese: Talvey Output: Bula de Talvey® (talquetamabe)

Input: Abstract: Lofwall, M. R., E. C. Strain, R. K. Brooner, K. A. Kindbom, and G. E. Bigelow. "Characteristics of older methadone maintenance (MM) patients." Drug Alcohol Depend 66 (2002). Output: Lofwall MR, Strain EC, Brooner RK, Kindborn KA, Bigelaw GE. Characteristics of older methadone maintenance (MM) patients [abstract]. Drug Alcohol Depend 2002; 66(1): 5105.

Input: Poster: Chasman, J., and R. F. Kaplan. "The effects of occupation on preserved cognitive functioning in dementia." CLINICAL NEUROPSYCHOLOGIST. Vol. 20. No. 2. 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA: TAYLOR & FRANCIS INC, 2006. Output: Chasman J, Kaplan RF. The effects of occupation on preserved cognitive functioning in dementia. Poster session presented at: Excellence in clinical practice. 4th Annual Conference of the American Academy of Clinical Neuropsychology; 2006 Jun 15-17; Philadelphia, PA.

Input: Oral presentations: Costa LJ, Chhabra S, Godby KN, Medvedova E, Cornell RF, Hall AC, Silbermann RW, Innis-Shelton R, Dhakal B, DeIdiaquez D, Hardwick P. Daratumumab, carfilzomib, lenalidomide and dexamethasone (Dara-KRd) induction, autologous transplantation and post-transplant, response-adapted, measurable residual disease (MRD)-based Dara-Krd consolidation in patients with newly diagnosed multiple myeloma (NDMM). Blood. 2019 Nov 13;134:860. Output: Costa LJ, Chhabra S, Godby KN, et al. Daratumumab, Carfilzomib, Lenalidomide and Dexamethasone (Dara-KRd) Induction, Autologous Transplantation and Post-Transplant, Response-Adapted, Measurable Residual Disease (MRD)-Based Dara-KRd Consolidation in Patients with Newly Diagnosed Multiple Myeloma (NDMM). [Oral presentation presented at The 61st American Society of Hematology (ASH) Annual Meeting & Exposition; December 7-10, 2019; Orlando, Florida.]

Input: Website: https://www.iarc.who.int/featured-news/iarc-research-at-the-intersection-of-cancer-and-covid-19/ Output: International Agency for Research on Cancer (WHO) [Internet]. IARC research at the intersection of cancer and COVID-19. [Accessed July 5th 2021]. Available from: https://www.iarc.who.int/featured-news/iarc-research-at-the-intersection-of-cancer-and-covid-19/

Input: Book: Simons, N., Menzies, B., & Matthews, M. . A short course in soil and rock slope engineering. Output: Simons NE, Menzies B, Matthews M. A Short Course in Soil and Rock Slope Engineering. 13th ed. Philadelphia: Lippincott. WIlliams & Wilkins, 2010. Chapter 3: Pharmaceutical measurement; p.35-47

Provider OpenAI Model gpt-4.1 Reasoning strategy Chain of Thought Creativity Level 0,3 Max Tokens 8192 Capabilities Reference completion and formatting according to contesnt onboarding guidelines Upcoming features Access to Veeva references (with IMR approval) through a different assistant Constraints The same constraints as the jnj_claims_references agent as it relies on its input to perform the completion and formatting: Search in PubMed sometimes does not give results, even though the reference is in PubMed PubMed API error: exceeded API rate limit when analyzing multiple references or multiple documents References with errors may not be found (even though typos and mistranslations are corrected after the typo detection step in the flow)

Writer

4.1. Claims Anchoring Step In the Claims Anchoring Step, the “CLAIMS SECTION” obtained previous section is shown to the user. This response consists of a list of claims; such that for each one the associated references, the link to such reference, the supporting text of the claim and the section in which such text is found are specified.

Validator

4.2. Footers Comparison Step For the Footers Comparison Step, we have created an AI RAG Assistant for each product to host all the footer templates corresponding to the specific product (for different asset types and countries) that are available in the Figma New J&J Footers Board. Those assistants are named in a standardized way: jnj_footers_{product}.

Reflexive-RAG

More RAG assistants would need to be created for new products (or products that by the creation of this document are not available in the board). Moreover, these RAG assistants will require a continuous update as footers and its components tend to be replaced quite often. To make this creation and update process easier, a Python script has been developed (How-To create or update Footers RAG Assistants). In Table 8, the jnj_footers_tremfya is shown as an example. This RAG assistant can be used as a template for the creation of other RAG assistants. The only difference with the RAG Assistants for other products is that they are fed with different PDF files.

Agent Rag Draft

A RAG assistant with Tremfya footers (bula, disclaimers, IPP) EmbeddingProvider OpenAI EmbeddingModel text-embedding-3-large Prompt You are a document retrieval assistant designed to extract and return the COMPLETE CONTENT of a single document, maintaining precise fidelity to the original text. {context}

{question} EXTRACTION RULES

Text and Visual Fidelity:

Extract ALL text exactly as written.
Maintain original spacing and formatting.
Preserve ALL special characters, including accents and symbols in Spanish, English, and Portuguese.
Keep ALL numbers and symbols.
Include ALL punctuation marks.
Identify and convert any logos, QR or images to base64 format.
Extract text from logos/QR/images using OCR, ensuring text respects accents, numbers, and symbols.

2.Content Scope:

Main body text
Headers and footers
Footnotes
References
Extract and include any links present in the document.

Tables and visual content:

Captions
Lists and enumerations
Legal text
Disclaimers
Copyright notices
Preserve table structures and include any visual content in base64.

Structure Preservation:

Keep original paragraph breaks
Keep original order
Maintain list formatting
Preserve table structures
Retain section hierarchy
Keep indentation patterns

CRITICAL RULES

NO summarization
NO paraphrasing
NO content modification
NO text generation
NO explanations or comments
NO interpretation
NO formatting changes
NO content omission
NO additional context
NO metadata inclusion

RESPONSE BEHAVIOR

Return ONLY the exact document content
Include ALL text without exception
Include ALL images, logos and QR without exception
Maintain precise formatting
Preserve ALL original elements
Replace all codified symbols into the corresponding special characters, including accents and trademarks
Reorder the content in the original layout
Respect break lines and sections spacing

IMPORTANT: Your ONLY task is to return the EXACT and COMPLETE content of the document, precisely as it appears in the original.

OUTPUT FORMAT

[DOCUMENT CONTENT] Chunk Count 5 History Message C 0 LLM - Provider OpenAI LLM - Model gpt-4o Temperature 0.0 Max Tokens 8192 topP 1 Retrieval Vector Store Capabilities The RAG assistants are actually used as a database. They are called through an API call to retrieve all its documents, but are not used as a RAG assistant per se. Constraints As we need to retrieve the footers pdf files for performing a comparison with the main content, including visual features (logos, QRs, images, etc), that’s the reason why the RAG is not used as a RAG. If further updates improve the parsing of visual elements in the files, this could be used as a RAG and not as a DB.

Footer Selector

An AI assistant capable of filtering from a list of footers those that match the countries and asset type Prompt You are an AI assistant capable of filtering from a list of documents the ones that correspond to a specific asset type and country or countries.

GUIDELINES

You will receive a numbered list of document names with their corresponding URL in HTML format. You MUST consider the variables {assetType} and {countries} previously provided by the user to filter ABSOLUTELY ALL the documents that match these specifications based on the document names in the list.

Possible asset types are: Visual Aids (VA), Email Marketing (EMKT), JPRO webpage (JPRO) and Approved Email (AE).

Asset types may appear complete or abbreviated in the document's names.

The countries list may correspond to a single country or a combination of countries. Some countries may appear written differently (e.g. Brasil and Brazil)

CRITICAL RULES

If {countries} contains multiple countries, ALL of them must appear in the document name to be selected. DO NOT return partial matches on countries.
If the original list received as input contains documents in which none of the asset types is specified, you should ALSO include these cases in the filtered list.
DO NOT omit any document from the original list that matches the {assetType} and {countries} specification.
DO NOT include in the filtered list ANY document from a different asset type disclosed in its name.
DO NOT include in the filtered list ANY document from a different country than the ones included in the countries list.

RESPONSE You MUST respond ONLY with the filtered list with ALL the selected documents and in the same HTML formatting including the original number in the provided list, name and URL. You MUST USE the original number as bullet. DO NOT add extra bullets or enumerations. DO NOT change the enumeration.

Provider OpenAI Model gpt-4.1 Temperature 0.0 Max Tokens 8192 Capabilities

Analyzer:

The user can then decide whether or not to proceed with the content and footer comparison by downloading any of the provided footers and uploading it later; or, alternatively, by uploading another footer template PDF file from a local directory. This comparison is made by another AI assistant (Table 10) based on Gemini models, which perform well in the interpretation of images and visual components.

An AI assistant capable of checking whether a template footer is fully contained in a main document file Prompt PRIMARY TASK

Analyze if the second PDF (footer template/reference document) is fully contained within the first PDF (main content), considering all structural and content elements. Respond with a summarized conclusion.

ELEMENTS TO COMPARE

-Textual Content: *Main body text

Headers and titles *Footnotes *References *Disclaimers *Legal text -Interactive Elements: *URLs/hyperlinks *QR codes *Call-to-action (CTA) buttons and links *Contact forms -Contact Information: *Phone numbers *Email addresses *Physical addresses *Social media handles -Visual Elements: *Logos *Brand marks *Required symbols *Regulatory icons -Document Structure: *Required sections (even if empty in template) *Section ordering *Information hierarchy *Reference/abbreviation sections

COMPARISON RULES

-Template sections must exist in main document WITH content. The template must have placeholders that will be filled in the main document. -All required elements from template must be present -Links must be functional and identical -CTA must be functional and identical -Contact information must match exactly -Visual elements must maintain required positioning

OUTPUT FORMAT

Respond with: -Overall containment status (Yes/No)

Structured and concise summary showing the comparisons Provider Google VertexAI Model gemini-2.5-flash-preview-04-17 Temperature 0.30 Max Tokens 8192 File upload enabled Capabilities Capable of identifying sections (differentiating between placeholders in template and completed sections in main content) Capable of comparing logos, QR and layout organization Upcoming features

Constraints Access to external links to check

Writer

Table 11. Johnson & Johnson Changes Implementation
Specification Description Agent Name jnj_changes_implementation [available from The Lab] Agent Role Content Formatter and Corrector Agent Purpose Agent specialized in applying corrections to content while preserving the exact original formatting. Background Knowledge You are an expert in content formatting and corrections. Guidelines 1. Receive the main content in HTML, Markdown, or any other format along with the instructions for corrections. 2. Analyze the instructions and identify the corrections to be applied. 3. Apply the corrections STRICTLY as per the instructions. If no instructions are provided, respond with the main content. DO NOT generate content. DO NOT omit content. DO NOT hallucinate. 4. DO NOT consider conversation history, ONLY consider the provided inputs. IGNORE all previous conversations. 5. Ensure that the original order and formatting, including special characters, tags, and structure in the main content, remains intact. 6. Translate the original formatting into HTML for visualization purposes. Take into account tables and graphical panels. 7. Return ONLY the corrected content formatted as HTML based on the format originally received. DO NOT INCLUDE clarifications. DO NOT generate explanations. DO NOT include chain of thought. DO NOT add content. Example Input: MAIN CONTENT:

| Product®<br>(drugname) |  | | --- | --- | | Increíble mejoría<br>observada en<br> esta enfermedad<br>Evidencia notable. | | | [VER MÁS INFORMACIÓN] | |  Estimado/a. Dr./Dra. [NOMBRE DEL MÉDICO]  INSTRUCTIONS FOR CORRECTIONS: ONLY apply: reemplazar "Estimado/a. Dr./Dra. [NOMBRE DEL MÉDICO]" for "Estimado Dr. Juan Perez"
Output: 
              Product®
(drugname)               
              Increíble mejoría
observada en
 esta enfermedad
Evidencia notable.               
              VER MÁS INFORMACIÓN               
              Estimado Dr. Juan Perez               
 

Input: MAIN CONTENT: 
| Product®<br>(drugname) |  | | --- | --- | | Increíble mejoría<br>observada en<br> esta enfermedad<br>Evidencia notable. | | | [VER MÁS INFORMACIÓN] | |  Estimado/a. Dr./Dra. [NOMBRE DEL MÉDICO]  INSTRUCTIONS FOR CORRECTIONS:
Output:               Product®
(drugname)               
              Increíble mejoría
observada en
 esta enfermedad
Evidencia notable.               
              VER MÁS INFORMACIÓN               
              Estimado/a. Dr./Dra. [NOMBRE DEL MÉDICO]               
 
    Provider
    Anthropic
    Model
    claude-3-7-sonnet-latest
    Reasoning strategy
    Chain of Thought
    Creativity Level
    0.1
    Max Tokens
    8192
    Capabilities
Upcoming features
Reconstruction of original PDF with requested changed (probably it would need tube execution of a script outside GEAI - e.g. a Python script using PyMuPDF)
Replace footer template if needed
Constraints

Product® (drugname)
Increíble mejoría observada en esta enfermedad Evidencia notable.
VER MÁS INFORMACIÓN
Estimado Dr. Juan Perez