Upload folder using huggingface_hub
Browse files- OnClass.data-00000-of-00001 +1 -1
- OnClass.index +0 -0
- OnClass.meta +0 -0
- OnClass.npz +2 -2
- accuracies.json +2 -2
- celltypist.pkl +1 -1
- harmony_knn_classifier.joblib +2 -2
- popv_output/predictions.csv +0 -0
- preprocessing.json +23 -23
- pynndescent_index.joblib +2 -2
- scanvi/model.pt +1 -1
- scvi/model.pt +1 -1
- scvi_knn_classifier.joblib +2 -2
- svm_classifier.joblib +1 -1
- svm_classifier_cuml.joblib +1 -1
- xgboost_classifier.model +2 -2
OnClass.data-00000-of-00001
CHANGED
@@ -1,3 +1,3 @@
|
|
1 |
version https://git-lfs.github.com/spec/v1
|
2 |
-
oid sha256:
|
3 |
size 27239224
|
|
|
1 |
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:ed09a74120492797fa068d6aa46d24f159211acd3db1e1796343aeecf0be9c4d
|
3 |
size 27239224
|
OnClass.index
CHANGED
Binary files a/OnClass.index and b/OnClass.index differ
|
|
OnClass.meta
CHANGED
Binary files a/OnClass.meta and b/OnClass.meta differ
|
|
OnClass.npz
CHANGED
@@ -1,3 +1,3 @@
|
|
1 |
version https://git-lfs.github.com/spec/v1
|
2 |
-
oid sha256:
|
3 |
-
size
|
|
|
1 |
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:17b9965ab8fb46ab5215b0feab2437fb3da832408b6153b8f94ad60f5d95e922
|
3 |
+
size 144111997
|
accuracies.json
CHANGED
@@ -1,4 +1,4 @@
|
|
1 |
{
|
2 |
-
"query_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| CD4-positive, alpha-beta T cell |
|
3 |
-
"ref_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| CD4-positive, alpha-beta T cell |
|
4 |
}
|
|
|
1 |
{
|
2 |
+
"query_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| CD4-positive, alpha-beta T cell | 748 | 0.76 | 0.85 | 0.85 | 0.72 | 0.00 | 0.77 | 0.71 | 0.79 | 0.85 |\n| CD4-positive, alpha-beta thymocyte | 447 | 0.70 | 0.52 | 0.76 | 0.63 | 0.00 | 0.60 | 0.61 | 0.70 | 0.74 |\n| B cell | 450 | 1.00 | 0.99 | 0.99 | 1.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| thymic fibroblast type 2 | 378 | 0.84 | 0.88 | 0.89 | 0.82 | 0.00 | 0.91 | 0.89 | 0.89 | 0.92 |\n| thymic fibroblast type 1 | 346 | 0.85 | 0.86 | 0.89 | 0.82 | 0.00 | 0.90 | 0.88 | 0.88 | 0.91 |\n| CD8-positive, alpha-beta T cell | 275 | 0.79 | 0.86 | 0.86 | 0.82 | 0.00 | 0.86 | 0.79 | 0.86 | 0.87 |\n| capillary endothelial cell | 270 | 0.79 | 0.84 | 0.90 | 0.79 | 0.00 | 0.83 | 0.83 | 0.82 | 0.86 |\n| naive thymus-derived CD4-positive, alpha-beta T cell | 259 | 0.48 | 0.44 | 0.51 | 0.31 | 0.00 | 0.49 | 0.35 | 0.51 | 0.54 |\n| smooth muscle cell | 228 | 0.98 | 0.97 | 0.97 | 0.98 | 0.00 | 0.99 | 0.98 | 0.98 | 0.99 |\n| vein endothelial cell | 213 | 0.82 | 0.82 | 0.90 | 0.77 | 0.00 | 0.84 | 0.84 | 0.84 | 0.87 |\n| plasma cell | 136 | 1.00 | 0.98 | 0.99 | 0.99 | 0.00 | 1.00 | 0.99 | 0.99 | 0.99 |\n| endothelial cell of artery | 85 | 0.90 | 0.94 | 0.91 | 0.69 | 0.00 | 0.85 | 0.89 | 0.90 | 0.92 |\n| macrophage | 86 | 0.98 | 0.98 | 0.97 | 0.98 | 0.00 | 0.98 | 0.99 | 1.00 | 0.99 |\n| CD8-positive, alpha-beta thymocyte | 71 | 0.68 | 0.78 | 0.85 | 0.52 | 0.00 | 0.72 | 0.67 | 0.73 | 0.82 |\n| thymocyte | 45 | 0.63 | 0.71 | 0.83 | 0.36 | 0.00 | 0.78 | 0.67 | 0.80 | 0.79 |\n| naive thymus-derived CD8-positive, alpha-beta T cell | 34 | 0.46 | 0.53 | 0.63 | 0.14 | 0.00 | 0.50 | 0.52 | 0.57 | 0.72 |\n| natural killer cell | 46 | 0.89 | 0.97 | 0.93 | 0.92 | 0.00 | 0.90 | 0.94 | 0.94 | 0.98 |\n| endothelial cell of lymphatic vessel | 35 | 1.00 | 1.00 | 0.99 | 0.96 | 0.00 | 0.95 | 1.00 | 1.00 | 1.00 |\n| fibroblast | 23 | 0.46 | 0.22 | 0.18 | 0.77 | 0.00 | 0.73 | 0.79 | 0.75 | 0.84 |\n| vascular associated smooth muscle cell | 12 | 0.67 | 0.00 | 0.27 | 0.74 | 0.00 | 0.83 | 0.92 | 0.89 | 0.91 |\n| mesothelial cell | 16 | 0.93 | 0.93 | 0.97 | 0.88 | 0.00 | 0.91 | 0.94 | 0.88 | 0.97 |\n| erythrocyte | 18 | 0.91 | 1.00 | 0.91 | 0.94 | 0.00 | 0.94 | 0.97 | 0.97 | 0.97 |\n| neuro-medullary thymic epithelial cell | 14 | 0.96 | 0.96 | 0.92 | 0.96 | 0.00 | 0.93 | 1.00 | 0.96 | 1.00 |\n| neutrophil | 12 | 0.74 | 0.79 | 0.92 | 0.92 | 0.00 | 0.92 | 0.92 | 0.83 | 0.88 |\n| hematopoietic precursor cell | 10 | 0.80 | 0.18 | 0.95 | 0.90 | 0.00 | 0.90 | 0.89 | 0.82 | 0.84 |\n| myo-medullary thymic epithelial cell | 5 | 0.91 | 0.91 | 0.89 | 0.91 | 0.00 | 0.91 | 0.91 | 0.91 | 0.91 |\n| medullary thymic epithelial cell | 7 | 1.00 | 0.83 | 0.92 | 0.62 | 0.00 | 0.88 | 0.92 | 1.00 | 1.00 |\n| monocyte | 2 | 0.00 | 0.00 | 0.80 | 0.00 | 0.00 | 0.67 | 0.67 | 1.00 | 0.67 |\n| mast cell | 2 | 1.00 | 1.00 | 0.67 | 0.00 | 0.00 | 0.40 | 1.00 | 1.00 | 1.00 |\n| fast muscle cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| T follicular helper cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| innate lymphoid cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| endothelial cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
|
3 |
+
"ref_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| CD4-positive, alpha-beta T cell | 6378 | 0.75 | 0.81 | 0.89 | 0.79 | 0.00 | 0.78 | 0.74 | 0.78 | 0.86 |\n| CD4-positive, alpha-beta thymocyte | 4116 | 0.72 | 0.44 | 0.85 | 0.78 | 0.00 | 0.74 | 0.69 | 0.75 | 0.81 |\n| B cell | 4012 | 1.00 | 0.99 | 1.00 | 1.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| thymic fibroblast type 2 | 3827 | 0.88 | 0.90 | 0.94 | 0.90 | 0.00 | 0.93 | 0.92 | 0.92 | 0.95 |\n| thymic fibroblast type 1 | 2924 | 0.86 | 0.86 | 0.93 | 0.87 | 0.00 | 0.91 | 0.90 | 0.90 | 0.93 |\n| CD8-positive, alpha-beta T cell | 2542 | 0.79 | 0.84 | 0.90 | 0.85 | 0.00 | 0.82 | 0.82 | 0.84 | 0.87 |\n| capillary endothelial cell | 2351 | 0.79 | 0.85 | 0.94 | 0.87 | 0.00 | 0.88 | 0.89 | 0.88 | 0.91 |\n| naive thymus-derived CD4-positive, alpha-beta T cell | 2264 | 0.48 | 0.41 | 0.67 | 0.55 | 0.00 | 0.55 | 0.50 | 0.55 | 0.64 |\n| smooth muscle cell | 1997 | 0.96 | 0.94 | 0.99 | 0.98 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |\n| vein endothelial cell | 1835 | 0.82 | 0.82 | 0.93 | 0.83 | 0.00 | 0.87 | 0.89 | 0.88 | 0.91 |\n| plasma cell | 1442 | 0.99 | 0.99 | 0.99 | 1.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| endothelial cell of artery | 688 | 0.89 | 0.92 | 0.96 | 0.78 | 0.00 | 0.93 | 0.94 | 0.94 | 0.96 |\n| macrophage | 684 | 0.98 | 0.98 | 0.99 | 0.97 | 0.00 | 0.98 | 1.00 | 1.00 | 0.99 |\n| CD8-positive, alpha-beta thymocyte | 601 | 0.64 | 0.70 | 0.82 | 0.63 | 0.00 | 0.78 | 0.79 | 0.82 | 0.86 |\n| thymocyte | 410 | 0.66 | 0.67 | 0.83 | 0.49 | 0.00 | 0.84 | 0.81 | 0.88 | 0.92 |\n| naive thymus-derived CD8-positive, alpha-beta T cell | 400 | 0.46 | 0.45 | 0.73 | 0.18 | 0.00 | 0.69 | 0.66 | 0.75 | 0.77 |\n| natural killer cell | 382 | 0.86 | 0.90 | 0.93 | 0.90 | 0.00 | 0.91 | 0.96 | 0.96 | 0.96 |\n| endothelial cell of lymphatic vessel | 336 | 0.97 | 0.97 | 0.98 | 0.93 | 0.00 | 0.95 | 0.99 | 0.97 | 0.99 |\n| fibroblast | 249 | 0.65 | 0.07 | 0.96 | 0.89 | 0.00 | 0.97 | 0.89 | 0.91 | 0.96 |\n| vascular associated smooth muscle cell | 229 | 0.69 | 0.03 | 0.96 | 0.86 | 0.00 | 0.97 | 0.97 | 0.95 | 0.98 |\n| mesothelial cell | 159 | 0.94 | 0.90 | 0.96 | 0.93 | 0.00 | 0.98 | 0.97 | 0.97 | 0.98 |\n| erythrocyte | 134 | 0.94 | 0.91 | 0.93 | 0.95 | 0.00 | 0.97 | 0.98 | 0.94 | 0.98 |\n| neuro-medullary thymic epithelial cell | 121 | 0.92 | 0.91 | 0.90 | 0.90 | 0.00 | 0.98 | 1.00 | 0.98 | 0.98 |\n| neutrophil | 109 | 0.61 | 0.73 | 0.90 | 0.85 | 0.00 | 0.97 | 1.00 | 1.00 | 1.00 |\n| hematopoietic precursor cell | 82 | 0.74 | 0.07 | 0.89 | 0.87 | 0.00 | 0.97 | 1.00 | 0.99 | 0.99 |\n| myo-medullary thymic epithelial cell | 72 | 0.85 | 0.87 | 0.96 | 0.95 | 0.00 | 0.98 | 0.99 | 0.99 | 0.97 |\n| medullary thymic epithelial cell | 36 | 0.83 | 0.62 | 0.87 | 0.67 | 0.00 | 0.96 | 1.00 | 1.00 | 0.96 |\n| monocyte | 24 | 0.00 | 0.00 | 0.82 | 0.42 | 0.00 | 0.84 | 1.00 | 0.98 | 0.93 |\n| mast cell | 22 | 0.88 | 0.77 | 0.87 | 0.71 | 0.00 | 0.78 | 0.96 | 1.00 | 1.00 |\n| fast muscle cell | 21 | 0.00 | 0.28 | 0.98 | 0.85 | 0.00 | 0.98 | 1.00 | 1.00 | 0.98 |\n| T follicular helper cell | 6 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.33 | 0.86 | 0.75 | 0.83 |\n| innate lymphoid cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.80 | 0.50 | 1.00 | 1.00 |\n| endothelial cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 0.67 | 1.00 | 1.00 |"
|
4 |
}
|
celltypist.pkl
CHANGED
@@ -1,3 +1,3 @@
|
|
1 |
version https://git-lfs.github.com/spec/v1
|
2 |
-
oid sha256:
|
3 |
size 698200
|
|
|
1 |
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:f0f33054aef90044a8adc73fb36ab34404e010d256fa1c7bfeb68c0965a17db5
|
3 |
size 698200
|
harmony_knn_classifier.joblib
CHANGED
@@ -1,3 +1,3 @@
|
|
1 |
version https://git-lfs.github.com/spec/v1
|
2 |
-
oid sha256:
|
3 |
-
size
|
|
|
1 |
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:2d9e55a6b547b9ec79a32969a91ceeb49e4724d132b920c8b1dd155427ac32c7
|
3 |
+
size 29522437
|
popv_output/predictions.csv
CHANGED
The diff for this file is too large to render.
See raw diff
|
|
preprocessing.json
CHANGED
@@ -22,7 +22,6 @@
|
|
22 |
"ENSG00000005961",
|
23 |
"ENSG00000006007",
|
24 |
"ENSG00000006025",
|
25 |
-
"ENSG00000006071",
|
26 |
"ENSG00000006210",
|
27 |
"ENSG00000006282",
|
28 |
"ENSG00000006283",
|
@@ -189,6 +188,7 @@
|
|
189 |
"ENSG00000065600",
|
190 |
"ENSG00000065618",
|
191 |
"ENSG00000065621",
|
|
|
192 |
"ENSG00000065970",
|
193 |
"ENSG00000066185",
|
194 |
"ENSG00000066230",
|
@@ -577,6 +577,7 @@
|
|
577 |
"ENSG00000103365",
|
578 |
"ENSG00000103415",
|
579 |
"ENSG00000103429",
|
|
|
580 |
"ENSG00000103494",
|
581 |
"ENSG00000103496",
|
582 |
"ENSG00000103522",
|
@@ -600,6 +601,7 @@
|
|
600 |
"ENSG00000104432",
|
601 |
"ENSG00000104442",
|
602 |
"ENSG00000104518",
|
|
|
603 |
"ENSG00000104635",
|
604 |
"ENSG00000104738",
|
605 |
"ENSG00000104774",
|
@@ -657,8 +659,8 @@
|
|
657 |
"ENSG00000106049",
|
658 |
"ENSG00000106077",
|
659 |
"ENSG00000106086",
|
660 |
-
"ENSG00000106113",
|
661 |
"ENSG00000106236",
|
|
|
662 |
"ENSG00000106278",
|
663 |
"ENSG00000106290",
|
664 |
"ENSG00000106299",
|
@@ -855,6 +857,7 @@
|
|
855 |
"ENSG00000113924",
|
856 |
"ENSG00000114098",
|
857 |
"ENSG00000114166",
|
|
|
858 |
"ENSG00000114388",
|
859 |
"ENSG00000114439",
|
860 |
"ENSG00000114491",
|
@@ -873,8 +876,10 @@
|
|
873 |
"ENSG00000115085",
|
874 |
"ENSG00000115137",
|
875 |
"ENSG00000115138",
|
|
|
876 |
"ENSG00000115163",
|
877 |
"ENSG00000115165",
|
|
|
878 |
"ENSG00000115211",
|
879 |
"ENSG00000115216",
|
880 |
"ENSG00000115267",
|
@@ -966,7 +971,6 @@
|
|
966 |
"ENSG00000119321",
|
967 |
"ENSG00000119392",
|
968 |
"ENSG00000119401",
|
969 |
-
"ENSG00000119402",
|
970 |
"ENSG00000119408",
|
971 |
"ENSG00000119508",
|
972 |
"ENSG00000119599",
|
@@ -991,6 +995,7 @@
|
|
991 |
"ENSG00000120129",
|
992 |
"ENSG00000120137",
|
993 |
"ENSG00000120217",
|
|
|
994 |
"ENSG00000120324",
|
995 |
"ENSG00000120327",
|
996 |
"ENSG00000120437",
|
@@ -1012,7 +1017,6 @@
|
|
1012 |
"ENSG00000121297",
|
1013 |
"ENSG00000121335",
|
1014 |
"ENSG00000121406",
|
1015 |
-
"ENSG00000121579",
|
1016 |
"ENSG00000121621",
|
1017 |
"ENSG00000121671",
|
1018 |
"ENSG00000121680",
|
@@ -1021,7 +1025,6 @@
|
|
1021 |
"ENSG00000121807",
|
1022 |
"ENSG00000121897",
|
1023 |
"ENSG00000121903",
|
1024 |
-
"ENSG00000121933",
|
1025 |
"ENSG00000121966",
|
1026 |
"ENSG00000122034",
|
1027 |
"ENSG00000122122",
|
@@ -1038,13 +1041,13 @@
|
|
1038 |
"ENSG00000122696",
|
1039 |
"ENSG00000122711",
|
1040 |
"ENSG00000122778",
|
|
|
1041 |
"ENSG00000122861",
|
1042 |
"ENSG00000122862",
|
1043 |
"ENSG00000122877",
|
1044 |
"ENSG00000122952",
|
1045 |
"ENSG00000122965",
|
1046 |
"ENSG00000122971",
|
1047 |
-
"ENSG00000123080",
|
1048 |
"ENSG00000123131",
|
1049 |
"ENSG00000123136",
|
1050 |
"ENSG00000123146",
|
@@ -1101,7 +1104,6 @@
|
|
1101 |
"ENSG00000125384",
|
1102 |
"ENSG00000125434",
|
1103 |
"ENSG00000125445",
|
1104 |
-
"ENSG00000125447",
|
1105 |
"ENSG00000125454",
|
1106 |
"ENSG00000125457",
|
1107 |
"ENSG00000125505",
|
@@ -1146,7 +1148,6 @@
|
|
1146 |
"ENSG00000127329",
|
1147 |
"ENSG00000127364",
|
1148 |
"ENSG00000127399",
|
1149 |
-
"ENSG00000127418",
|
1150 |
"ENSG00000127463",
|
1151 |
"ENSG00000127526",
|
1152 |
"ENSG00000127530",
|
@@ -1174,7 +1175,6 @@
|
|
1174 |
"ENSG00000128298",
|
1175 |
"ENSG00000128340",
|
1176 |
"ENSG00000128342",
|
1177 |
-
"ENSG00000128383",
|
1178 |
"ENSG00000128394",
|
1179 |
"ENSG00000128408",
|
1180 |
"ENSG00000128482",
|
@@ -1203,6 +1203,7 @@
|
|
1203 |
"ENSG00000129596",
|
1204 |
"ENSG00000129810",
|
1205 |
"ENSG00000129988",
|
|
|
1206 |
"ENSG00000130032",
|
1207 |
"ENSG00000130035",
|
1208 |
"ENSG00000130037",
|
@@ -1278,12 +1279,14 @@
|
|
1278 |
"ENSG00000132313",
|
1279 |
"ENSG00000132329",
|
1280 |
"ENSG00000132330",
|
|
|
1281 |
"ENSG00000132406",
|
1282 |
"ENSG00000132423",
|
1283 |
"ENSG00000132436",
|
1284 |
"ENSG00000132465",
|
1285 |
"ENSG00000132475",
|
1286 |
"ENSG00000132478",
|
|
|
1287 |
"ENSG00000132554",
|
1288 |
"ENSG00000132563",
|
1289 |
"ENSG00000132603",
|
@@ -1348,7 +1351,6 @@
|
|
1348 |
"ENSG00000134539",
|
1349 |
"ENSG00000134545",
|
1350 |
"ENSG00000134569",
|
1351 |
-
"ENSG00000134594",
|
1352 |
"ENSG00000134762",
|
1353 |
"ENSG00000134765",
|
1354 |
"ENSG00000134779",
|
@@ -1436,7 +1438,6 @@
|
|
1436 |
"ENSG00000136546",
|
1437 |
"ENSG00000136710",
|
1438 |
"ENSG00000136754",
|
1439 |
-
"ENSG00000136783",
|
1440 |
"ENSG00000136856",
|
1441 |
"ENSG00000136869",
|
1442 |
"ENSG00000136891",
|
@@ -1511,6 +1512,7 @@
|
|
1511 |
"ENSG00000138375",
|
1512 |
"ENSG00000138395",
|
1513 |
"ENSG00000138435",
|
|
|
1514 |
"ENSG00000138587",
|
1515 |
"ENSG00000138614",
|
1516 |
"ENSG00000138642",
|
@@ -1595,7 +1597,6 @@
|
|
1595 |
"ENSG00000141026",
|
1596 |
"ENSG00000141030",
|
1597 |
"ENSG00000141040",
|
1598 |
-
"ENSG00000141098",
|
1599 |
"ENSG00000141161",
|
1600 |
"ENSG00000141232",
|
1601 |
"ENSG00000141255",
|
@@ -1614,6 +1615,7 @@
|
|
1614 |
"ENSG00000141646",
|
1615 |
"ENSG00000141682",
|
1616 |
"ENSG00000141744",
|
|
|
1617 |
"ENSG00000141934",
|
1618 |
"ENSG00000141968",
|
1619 |
"ENSG00000142002",
|
@@ -1782,6 +1784,7 @@
|
|
1782 |
"ENSG00000147573",
|
1783 |
"ENSG00000147604",
|
1784 |
"ENSG00000147606",
|
|
|
1785 |
"ENSG00000147647",
|
1786 |
"ENSG00000147852",
|
1787 |
"ENSG00000147872",
|
@@ -1890,7 +1893,6 @@
|
|
1890 |
"ENSG00000152785",
|
1891 |
"ENSG00000152904",
|
1892 |
"ENSG00000152931",
|
1893 |
-
"ENSG00000152932",
|
1894 |
"ENSG00000152939",
|
1895 |
"ENSG00000152952",
|
1896 |
"ENSG00000152969",
|
@@ -1986,7 +1988,6 @@
|
|
1986 |
"ENSG00000156966",
|
1987 |
"ENSG00000156983",
|
1988 |
"ENSG00000157036",
|
1989 |
-
"ENSG00000157064",
|
1990 |
"ENSG00000157103",
|
1991 |
"ENSG00000157168",
|
1992 |
"ENSG00000157184",
|
@@ -2053,6 +2054,7 @@
|
|
2053 |
"ENSG00000159445",
|
2054 |
"ENSG00000159496",
|
2055 |
"ENSG00000159588",
|
|
|
2056 |
"ENSG00000159618",
|
2057 |
"ENSG00000159674",
|
2058 |
"ENSG00000159713",
|
@@ -2240,7 +2242,6 @@
|
|
2240 |
"ENSG00000164078",
|
2241 |
"ENSG00000164081",
|
2242 |
"ENSG00000164088",
|
2243 |
-
"ENSG00000164093",
|
2244 |
"ENSG00000164099",
|
2245 |
"ENSG00000164104",
|
2246 |
"ENSG00000164109",
|
@@ -2443,7 +2444,6 @@
|
|
2443 |
"ENSG00000168301",
|
2444 |
"ENSG00000168310",
|
2445 |
"ENSG00000168350",
|
2446 |
-
"ENSG00000168389",
|
2447 |
"ENSG00000168393",
|
2448 |
"ENSG00000168394",
|
2449 |
"ENSG00000168404",
|
@@ -2528,7 +2528,6 @@
|
|
2528 |
"ENSG00000170577",
|
2529 |
"ENSG00000170619",
|
2530 |
"ENSG00000170627",
|
2531 |
-
"ENSG00000170677",
|
2532 |
"ENSG00000170681",
|
2533 |
"ENSG00000170684",
|
2534 |
"ENSG00000170745",
|
@@ -2710,7 +2709,6 @@
|
|
2710 |
"ENSG00000175352",
|
2711 |
"ENSG00000175356",
|
2712 |
"ENSG00000175414",
|
2713 |
-
"ENSG00000175426",
|
2714 |
"ENSG00000175449",
|
2715 |
"ENSG00000175489",
|
2716 |
"ENSG00000175536",
|
@@ -2733,7 +2731,6 @@
|
|
2733 |
"ENSG00000176055",
|
2734 |
"ENSG00000176087",
|
2735 |
"ENSG00000176125",
|
2736 |
-
"ENSG00000176142",
|
2737 |
"ENSG00000176225",
|
2738 |
"ENSG00000176293",
|
2739 |
"ENSG00000176383",
|
@@ -2753,6 +2750,7 @@
|
|
2753 |
"ENSG00000176928",
|
2754 |
"ENSG00000176945",
|
2755 |
"ENSG00000176953",
|
|
|
2756 |
"ENSG00000177054",
|
2757 |
"ENSG00000177098",
|
2758 |
"ENSG00000177105",
|
@@ -2785,7 +2783,6 @@
|
|
2785 |
"ENSG00000177943",
|
2786 |
"ENSG00000177946",
|
2787 |
"ENSG00000177963",
|
2788 |
-
"ENSG00000177990",
|
2789 |
"ENSG00000177993",
|
2790 |
"ENSG00000178015",
|
2791 |
"ENSG00000178026",
|
@@ -2835,7 +2832,6 @@
|
|
2835 |
"ENSG00000179431",
|
2836 |
"ENSG00000179523",
|
2837 |
"ENSG00000179562",
|
2838 |
-
"ENSG00000179593",
|
2839 |
"ENSG00000179598",
|
2840 |
"ENSG00000179627",
|
2841 |
"ENSG00000179630",
|
@@ -2909,6 +2905,7 @@
|
|
2909 |
"ENSG00000182013",
|
2910 |
"ENSG00000182054",
|
2911 |
"ENSG00000182107",
|
|
|
2912 |
"ENSG00000182118",
|
2913 |
"ENSG00000182134",
|
2914 |
"ENSG00000182173",
|
@@ -2984,7 +2981,6 @@
|
|
2984 |
"ENSG00000184292",
|
2985 |
"ENSG00000184307",
|
2986 |
"ENSG00000184378",
|
2987 |
-
"ENSG00000184389",
|
2988 |
"ENSG00000184445",
|
2989 |
"ENSG00000184454",
|
2990 |
"ENSG00000184465",
|
@@ -3015,7 +3011,6 @@
|
|
3015 |
"ENSG00000185344",
|
3016 |
"ENSG00000185347",
|
3017 |
"ENSG00000185352",
|
3018 |
-
"ENSG00000185359",
|
3019 |
"ENSG00000185361",
|
3020 |
"ENSG00000185379",
|
3021 |
"ENSG00000185404",
|
@@ -3049,6 +3044,7 @@
|
|
3049 |
"ENSG00000186026",
|
3050 |
"ENSG00000186056",
|
3051 |
"ENSG00000186105",
|
|
|
3052 |
"ENSG00000186230",
|
3053 |
"ENSG00000186280",
|
3054 |
"ENSG00000186300",
|
@@ -3464,6 +3460,7 @@
|
|
3464 |
"ENSG00000221829",
|
3465 |
"ENSG00000221838",
|
3466 |
"ENSG00000221883",
|
|
|
3467 |
"ENSG00000221909",
|
3468 |
"ENSG00000221916",
|
3469 |
"ENSG00000221944",
|
@@ -3600,6 +3597,7 @@
|
|
3600 |
"ENSG00000233110",
|
3601 |
"ENSG00000233175",
|
3602 |
"ENSG00000233184",
|
|
|
3603 |
"ENSG00000233334",
|
3604 |
"ENSG00000233554",
|
3605 |
"ENSG00000233705",
|
@@ -3876,6 +3874,7 @@
|
|
3876 |
"ENSG00000261390",
|
3877 |
"ENSG00000261423",
|
3878 |
"ENSG00000261465",
|
|
|
3879 |
"ENSG00000261801",
|
3880 |
"ENSG00000261934",
|
3881 |
"ENSG00000262136",
|
@@ -3904,6 +3903,7 @@
|
|
3904 |
"ENSG00000266010",
|
3905 |
"ENSG00000266094",
|
3906 |
"ENSG00000266258",
|
|
|
3907 |
"ENSG00000266524",
|
3908 |
"ENSG00000266904",
|
3909 |
"ENSG00000266916",
|
|
|
22 |
"ENSG00000005961",
|
23 |
"ENSG00000006007",
|
24 |
"ENSG00000006025",
|
|
|
25 |
"ENSG00000006210",
|
26 |
"ENSG00000006282",
|
27 |
"ENSG00000006283",
|
|
|
188 |
"ENSG00000065600",
|
189 |
"ENSG00000065618",
|
190 |
"ENSG00000065621",
|
191 |
+
"ENSG00000065665",
|
192 |
"ENSG00000065970",
|
193 |
"ENSG00000066185",
|
194 |
"ENSG00000066230",
|
|
|
577 |
"ENSG00000103365",
|
578 |
"ENSG00000103415",
|
579 |
"ENSG00000103429",
|
580 |
+
"ENSG00000103460",
|
581 |
"ENSG00000103494",
|
582 |
"ENSG00000103496",
|
583 |
"ENSG00000103522",
|
|
|
601 |
"ENSG00000104432",
|
602 |
"ENSG00000104442",
|
603 |
"ENSG00000104518",
|
604 |
+
"ENSG00000104626",
|
605 |
"ENSG00000104635",
|
606 |
"ENSG00000104738",
|
607 |
"ENSG00000104774",
|
|
|
659 |
"ENSG00000106049",
|
660 |
"ENSG00000106077",
|
661 |
"ENSG00000106086",
|
|
|
662 |
"ENSG00000106236",
|
663 |
+
"ENSG00000106258",
|
664 |
"ENSG00000106278",
|
665 |
"ENSG00000106290",
|
666 |
"ENSG00000106299",
|
|
|
857 |
"ENSG00000113924",
|
858 |
"ENSG00000114098",
|
859 |
"ENSG00000114166",
|
860 |
+
"ENSG00000114378",
|
861 |
"ENSG00000114388",
|
862 |
"ENSG00000114439",
|
863 |
"ENSG00000114491",
|
|
|
876 |
"ENSG00000115085",
|
877 |
"ENSG00000115137",
|
878 |
"ENSG00000115138",
|
879 |
+
"ENSG00000115145",
|
880 |
"ENSG00000115163",
|
881 |
"ENSG00000115165",
|
882 |
+
"ENSG00000115170",
|
883 |
"ENSG00000115211",
|
884 |
"ENSG00000115216",
|
885 |
"ENSG00000115267",
|
|
|
971 |
"ENSG00000119321",
|
972 |
"ENSG00000119392",
|
973 |
"ENSG00000119401",
|
|
|
974 |
"ENSG00000119408",
|
975 |
"ENSG00000119508",
|
976 |
"ENSG00000119599",
|
|
|
995 |
"ENSG00000120129",
|
996 |
"ENSG00000120137",
|
997 |
"ENSG00000120217",
|
998 |
+
"ENSG00000120256",
|
999 |
"ENSG00000120324",
|
1000 |
"ENSG00000120327",
|
1001 |
"ENSG00000120437",
|
|
|
1017 |
"ENSG00000121297",
|
1018 |
"ENSG00000121335",
|
1019 |
"ENSG00000121406",
|
|
|
1020 |
"ENSG00000121621",
|
1021 |
"ENSG00000121671",
|
1022 |
"ENSG00000121680",
|
|
|
1025 |
"ENSG00000121807",
|
1026 |
"ENSG00000121897",
|
1027 |
"ENSG00000121903",
|
|
|
1028 |
"ENSG00000121966",
|
1029 |
"ENSG00000122034",
|
1030 |
"ENSG00000122122",
|
|
|
1041 |
"ENSG00000122696",
|
1042 |
"ENSG00000122711",
|
1043 |
"ENSG00000122778",
|
1044 |
+
"ENSG00000122783",
|
1045 |
"ENSG00000122861",
|
1046 |
"ENSG00000122862",
|
1047 |
"ENSG00000122877",
|
1048 |
"ENSG00000122952",
|
1049 |
"ENSG00000122965",
|
1050 |
"ENSG00000122971",
|
|
|
1051 |
"ENSG00000123131",
|
1052 |
"ENSG00000123136",
|
1053 |
"ENSG00000123146",
|
|
|
1104 |
"ENSG00000125384",
|
1105 |
"ENSG00000125434",
|
1106 |
"ENSG00000125445",
|
|
|
1107 |
"ENSG00000125454",
|
1108 |
"ENSG00000125457",
|
1109 |
"ENSG00000125505",
|
|
|
1148 |
"ENSG00000127329",
|
1149 |
"ENSG00000127364",
|
1150 |
"ENSG00000127399",
|
|
|
1151 |
"ENSG00000127463",
|
1152 |
"ENSG00000127526",
|
1153 |
"ENSG00000127530",
|
|
|
1175 |
"ENSG00000128298",
|
1176 |
"ENSG00000128340",
|
1177 |
"ENSG00000128342",
|
|
|
1178 |
"ENSG00000128394",
|
1179 |
"ENSG00000128408",
|
1180 |
"ENSG00000128482",
|
|
|
1203 |
"ENSG00000129596",
|
1204 |
"ENSG00000129810",
|
1205 |
"ENSG00000129988",
|
1206 |
+
"ENSG00000129990",
|
1207 |
"ENSG00000130032",
|
1208 |
"ENSG00000130035",
|
1209 |
"ENSG00000130037",
|
|
|
1279 |
"ENSG00000132313",
|
1280 |
"ENSG00000132329",
|
1281 |
"ENSG00000132330",
|
1282 |
+
"ENSG00000132383",
|
1283 |
"ENSG00000132406",
|
1284 |
"ENSG00000132423",
|
1285 |
"ENSG00000132436",
|
1286 |
"ENSG00000132465",
|
1287 |
"ENSG00000132475",
|
1288 |
"ENSG00000132478",
|
1289 |
+
"ENSG00000132514",
|
1290 |
"ENSG00000132554",
|
1291 |
"ENSG00000132563",
|
1292 |
"ENSG00000132603",
|
|
|
1351 |
"ENSG00000134539",
|
1352 |
"ENSG00000134545",
|
1353 |
"ENSG00000134569",
|
|
|
1354 |
"ENSG00000134762",
|
1355 |
"ENSG00000134765",
|
1356 |
"ENSG00000134779",
|
|
|
1438 |
"ENSG00000136546",
|
1439 |
"ENSG00000136710",
|
1440 |
"ENSG00000136754",
|
|
|
1441 |
"ENSG00000136856",
|
1442 |
"ENSG00000136869",
|
1443 |
"ENSG00000136891",
|
|
|
1512 |
"ENSG00000138375",
|
1513 |
"ENSG00000138395",
|
1514 |
"ENSG00000138435",
|
1515 |
+
"ENSG00000138463",
|
1516 |
"ENSG00000138587",
|
1517 |
"ENSG00000138614",
|
1518 |
"ENSG00000138642",
|
|
|
1597 |
"ENSG00000141026",
|
1598 |
"ENSG00000141030",
|
1599 |
"ENSG00000141040",
|
|
|
1600 |
"ENSG00000141161",
|
1601 |
"ENSG00000141232",
|
1602 |
"ENSG00000141255",
|
|
|
1615 |
"ENSG00000141646",
|
1616 |
"ENSG00000141682",
|
1617 |
"ENSG00000141744",
|
1618 |
+
"ENSG00000141854",
|
1619 |
"ENSG00000141934",
|
1620 |
"ENSG00000141968",
|
1621 |
"ENSG00000142002",
|
|
|
1784 |
"ENSG00000147573",
|
1785 |
"ENSG00000147604",
|
1786 |
"ENSG00000147606",
|
1787 |
+
"ENSG00000147642",
|
1788 |
"ENSG00000147647",
|
1789 |
"ENSG00000147852",
|
1790 |
"ENSG00000147872",
|
|
|
1893 |
"ENSG00000152785",
|
1894 |
"ENSG00000152904",
|
1895 |
"ENSG00000152931",
|
|
|
1896 |
"ENSG00000152939",
|
1897 |
"ENSG00000152952",
|
1898 |
"ENSG00000152969",
|
|
|
1988 |
"ENSG00000156966",
|
1989 |
"ENSG00000156983",
|
1990 |
"ENSG00000157036",
|
|
|
1991 |
"ENSG00000157103",
|
1992 |
"ENSG00000157168",
|
1993 |
"ENSG00000157184",
|
|
|
2054 |
"ENSG00000159445",
|
2055 |
"ENSG00000159496",
|
2056 |
"ENSG00000159588",
|
2057 |
+
"ENSG00000159596",
|
2058 |
"ENSG00000159618",
|
2059 |
"ENSG00000159674",
|
2060 |
"ENSG00000159713",
|
|
|
2242 |
"ENSG00000164078",
|
2243 |
"ENSG00000164081",
|
2244 |
"ENSG00000164088",
|
|
|
2245 |
"ENSG00000164099",
|
2246 |
"ENSG00000164104",
|
2247 |
"ENSG00000164109",
|
|
|
2444 |
"ENSG00000168301",
|
2445 |
"ENSG00000168310",
|
2446 |
"ENSG00000168350",
|
|
|
2447 |
"ENSG00000168393",
|
2448 |
"ENSG00000168394",
|
2449 |
"ENSG00000168404",
|
|
|
2528 |
"ENSG00000170577",
|
2529 |
"ENSG00000170619",
|
2530 |
"ENSG00000170627",
|
|
|
2531 |
"ENSG00000170681",
|
2532 |
"ENSG00000170684",
|
2533 |
"ENSG00000170745",
|
|
|
2709 |
"ENSG00000175352",
|
2710 |
"ENSG00000175356",
|
2711 |
"ENSG00000175414",
|
|
|
2712 |
"ENSG00000175449",
|
2713 |
"ENSG00000175489",
|
2714 |
"ENSG00000175536",
|
|
|
2731 |
"ENSG00000176055",
|
2732 |
"ENSG00000176087",
|
2733 |
"ENSG00000176125",
|
|
|
2734 |
"ENSG00000176225",
|
2735 |
"ENSG00000176293",
|
2736 |
"ENSG00000176383",
|
|
|
2750 |
"ENSG00000176928",
|
2751 |
"ENSG00000176945",
|
2752 |
"ENSG00000176953",
|
2753 |
+
"ENSG00000177025",
|
2754 |
"ENSG00000177054",
|
2755 |
"ENSG00000177098",
|
2756 |
"ENSG00000177105",
|
|
|
2783 |
"ENSG00000177943",
|
2784 |
"ENSG00000177946",
|
2785 |
"ENSG00000177963",
|
|
|
2786 |
"ENSG00000177993",
|
2787 |
"ENSG00000178015",
|
2788 |
"ENSG00000178026",
|
|
|
2832 |
"ENSG00000179431",
|
2833 |
"ENSG00000179523",
|
2834 |
"ENSG00000179562",
|
|
|
2835 |
"ENSG00000179598",
|
2836 |
"ENSG00000179627",
|
2837 |
"ENSG00000179630",
|
|
|
2905 |
"ENSG00000182013",
|
2906 |
"ENSG00000182054",
|
2907 |
"ENSG00000182107",
|
2908 |
+
"ENSG00000182108",
|
2909 |
"ENSG00000182118",
|
2910 |
"ENSG00000182134",
|
2911 |
"ENSG00000182173",
|
|
|
2981 |
"ENSG00000184292",
|
2982 |
"ENSG00000184307",
|
2983 |
"ENSG00000184378",
|
|
|
2984 |
"ENSG00000184445",
|
2985 |
"ENSG00000184454",
|
2986 |
"ENSG00000184465",
|
|
|
3011 |
"ENSG00000185344",
|
3012 |
"ENSG00000185347",
|
3013 |
"ENSG00000185352",
|
|
|
3014 |
"ENSG00000185361",
|
3015 |
"ENSG00000185379",
|
3016 |
"ENSG00000185404",
|
|
|
3044 |
"ENSG00000186026",
|
3045 |
"ENSG00000186056",
|
3046 |
"ENSG00000186105",
|
3047 |
+
"ENSG00000186106",
|
3048 |
"ENSG00000186230",
|
3049 |
"ENSG00000186280",
|
3050 |
"ENSG00000186300",
|
|
|
3460 |
"ENSG00000221829",
|
3461 |
"ENSG00000221838",
|
3462 |
"ENSG00000221883",
|
3463 |
+
"ENSG00000221886",
|
3464 |
"ENSG00000221909",
|
3465 |
"ENSG00000221916",
|
3466 |
"ENSG00000221944",
|
|
|
3597 |
"ENSG00000233110",
|
3598 |
"ENSG00000233175",
|
3599 |
"ENSG00000233184",
|
3600 |
+
"ENSG00000233237",
|
3601 |
"ENSG00000233334",
|
3602 |
"ENSG00000233554",
|
3603 |
"ENSG00000233705",
|
|
|
3874 |
"ENSG00000261390",
|
3875 |
"ENSG00000261423",
|
3876 |
"ENSG00000261465",
|
3877 |
+
"ENSG00000261701",
|
3878 |
"ENSG00000261801",
|
3879 |
"ENSG00000261934",
|
3880 |
"ENSG00000262136",
|
|
|
3903 |
"ENSG00000266010",
|
3904 |
"ENSG00000266094",
|
3905 |
"ENSG00000266258",
|
3906 |
+
"ENSG00000266288",
|
3907 |
"ENSG00000266524",
|
3908 |
"ENSG00000266904",
|
3909 |
"ENSG00000266916",
|
pynndescent_index.joblib
CHANGED
@@ -1,3 +1,3 @@
|
|
1 |
version https://git-lfs.github.com/spec/v1
|
2 |
-
oid sha256:
|
3 |
-
size
|
|
|
1 |
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:8837895ee527569ccf1b89d30290456ab256880a78284df9303adb297e7ebf33
|
3 |
+
size 31341096
|
scanvi/model.pt
CHANGED
@@ -1,3 +1,3 @@
|
|
1 |
version https://git-lfs.github.com/spec/v1
|
2 |
-
oid sha256:
|
3 |
size 11790380
|
|
|
1 |
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:c8ad4828a05bc58ca79e1d897c6f37169edd238e5b60fc1aa41d34df3d8e46eb
|
3 |
size 11790380
|
scvi/model.pt
CHANGED
@@ -1,3 +1,3 @@
|
|
1 |
version https://git-lfs.github.com/spec/v1
|
2 |
-
oid sha256:
|
3 |
size 11187901
|
|
|
1 |
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:ac20c2dd78bbf4aa1849c1f4a94bba7d265a3f081eb01b9f4630eaefefa1e898
|
3 |
size 11187901
|
scvi_knn_classifier.joblib
CHANGED
@@ -1,3 +1,3 @@
|
|
1 |
version https://git-lfs.github.com/spec/v1
|
2 |
-
oid sha256:
|
3 |
-
size
|
|
|
1 |
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:4f26f92c0b97e8665424a6ed7470f69875bc9293da00e1e3400c290246d956b3
|
3 |
+
size 16459269
|
svm_classifier.joblib
CHANGED
@@ -1,3 +1,3 @@
|
|
1 |
version https://git-lfs.github.com/spec/v1
|
2 |
-
oid sha256:
|
3 |
size 5261366
|
|
|
1 |
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:cf7bd04359ad3d3624fd2e6f36974ac0389ef1c38007786d8fbe6630d7a31622
|
3 |
size 5261366
|
svm_classifier_cuml.joblib
CHANGED
@@ -1,3 +1,3 @@
|
|
1 |
version https://git-lfs.github.com/spec/v1
|
2 |
-
oid sha256:
|
3 |
size 563963
|
|
|
1 |
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:25a8b39e845830b7fa24d212b8e4fa73bd0445249a848d57adc841a28c9d05d3
|
3 |
size 563963
|
xgboost_classifier.model
CHANGED
@@ -1,3 +1,3 @@
|
|
1 |
version https://git-lfs.github.com/spec/v1
|
2 |
-
oid sha256:
|
3 |
-
size
|
|
|
1 |
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:217e58c3309d4e60bf294c4efadf1ee69709c2dec10c4e7e2de5c1022e94664d
|
3 |
+
size 8700390
|