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@@ -32,35 +32,35 @@ computed on a 10% random subset of the data that was not used for training.
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  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
34
  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
35
- | CD4-positive, alpha-beta T cell | 736 | 0.75 | 0.85 | 0.83 | 0.77 | 0.00 | 0.77 | 0.74 | 0.77 | 0.86 |
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- | CD4-positive, alpha-beta thymocyte | 438 | 0.70 | 0.51 | 0.77 | 0.66 | 0.00 | 0.66 | 0.62 | 0.71 | 0.75 |
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- | B cell | 447 | 1.00 | 0.99 | 0.99 | 1.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |
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- | thymic fibroblast type 2 | 382 | 0.85 | 0.89 | 0.88 | 0.89 | 0.00 | 0.92 | 0.88 | 0.89 | 0.92 |
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- | thymic fibroblast type 1 | 337 | 0.84 | 0.87 | 0.89 | 0.86 | 0.00 | 0.90 | 0.88 | 0.88 | 0.91 |
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- | CD8-positive, alpha-beta T cell | 287 | 0.82 | 0.86 | 0.87 | 0.83 | 0.00 | 0.85 | 0.84 | 0.86 | 0.86 |
41
- | capillary endothelial cell | 272 | 0.82 | 0.86 | 0.89 | 0.81 | 0.00 | 0.85 | 0.85 | 0.84 | 0.86 |
42
- | naive thymus-derived CD4-positive, alpha-beta T cell | 256 | 0.48 | 0.45 | 0.51 | 0.31 | 0.00 | 0.55 | 0.44 | 0.51 | 0.59 |
43
- | smooth muscle cell | 225 | 0.96 | 0.96 | 0.97 | 0.96 | 0.00 | 0.97 | 0.98 | 0.98 | 0.97 |
44
- | vein endothelial cell | 214 | 0.83 | 0.84 | 0.89 | 0.80 | 0.00 | 0.85 | 0.86 | 0.85 | 0.87 |
45
- | plasma cell | 138 | 0.99 | 0.99 | 0.97 | 0.99 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |
46
- | endothelial cell of artery | 86 | 0.89 | 0.93 | 0.91 | 0.78 | 0.00 | 0.93 | 0.91 | 0.90 | 0.93 |
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- | macrophage | 89 | 0.98 | 0.98 | 0.98 | 0.97 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |
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- | CD8-positive, alpha-beta thymocyte | 79 | 0.66 | 0.76 | 0.75 | 0.44 | 0.00 | 0.72 | 0.65 | 0.73 | 0.80 |
49
- | thymocyte | 47 | 0.49 | 0.68 | 0.80 | 0.30 | 0.00 | 0.72 | 0.67 | 0.83 | 0.84 |
50
- | naive thymus-derived CD8-positive, alpha-beta T cell | 37 | 0.33 | 0.48 | 0.48 | 0.00 | 0.00 | 0.50 | 0.51 | 0.64 | 0.64 |
51
- | natural killer cell | 45 | 0.94 | 0.97 | 0.95 | 0.86 | 0.00 | 0.94 | 0.94 | 0.94 | 0.95 |
52
- | endothelial cell of lymphatic vessel | 35 | 1.00 | 1.00 | 0.99 | 0.92 | 0.00 | 0.93 | 0.99 | 1.00 | 1.00 |
53
- | fibroblast | 22 | 0.43 | 0.29 | 0.31 | 0.59 | 0.00 | 0.90 | 0.71 | 0.81 | 0.79 |
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- | vascular associated smooth muscle cell | 15 | 0.79 | 0.00 | 0.57 | 0.33 | 0.00 | 0.64 | 0.94 | 0.93 | 0.70 |
55
- | mesothelial cell | 16 | 0.93 | 0.93 | 0.88 | 0.82 | 0.00 | 0.94 | 0.97 | 0.91 | 0.94 |
56
- | erythrocyte | 17 | 0.94 | 0.94 | 0.88 | 0.91 | 0.00 | 0.94 | 0.94 | 0.97 | 0.97 |
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- | neuro-medullary thymic epithelial cell | 15 | 0.97 | 0.97 | 0.93 | 0.93 | 0.00 | 1.00 | 1.00 | 0.97 | 1.00 |
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- | neutrophil | 12 | 0.74 | 0.88 | 0.87 | 0.77 | 0.00 | 0.85 | 0.92 | 0.83 | 0.88 |
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- | hematopoietic precursor cell | 10 | 0.80 | 0.46 | 0.82 | 0.90 | 0.00 | 0.84 | 0.89 | 0.86 | 0.84 |
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- | myo-medullary thymic epithelial cell | 5 | 0.91 | 0.89 | 0.91 | 0.91 | 0.00 | 0.91 | 0.91 | 0.91 | 0.91 |
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- | medullary thymic epithelial cell | 7 | 1.00 | 0.83 | 0.25 | 0.62 | 0.00 | 0.93 | 0.92 | 1.00 | 1.00 |
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- | monocyte | 1 | 0.00 | 0.00 | 1.00 | 0.00 | 0.00 | 1.00 | 0.00 | 0.00 | 0.00 |
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- | mast cell | 3 | 1.00 | 1.00 | 0.80 | 0.50 | 0.00 | 0.80 | 1.00 | 1.00 | 1.00 |
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  | fast muscle cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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  | T follicular helper cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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  | innate lymphoid cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
@@ -70,39 +70,39 @@ The train accuracies are computed on the training data.
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71
  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
72
  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
73
- | CD4-positive, alpha-beta T cell | 6390 | 0.74 | 0.81 | 0.89 | 0.81 | 0.00 | 0.78 | 0.75 | 0.78 | 0.86 |
74
- | CD4-positive, alpha-beta thymocyte | 4125 | 0.72 | 0.45 | 0.84 | 0.79 | 0.00 | 0.75 | 0.69 | 0.76 | 0.82 |
75
- | B cell | 4015 | 1.00 | 0.99 | 1.00 | 1.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |
76
- | thymic fibroblast type 2 | 3823 | 0.87 | 0.89 | 0.94 | 0.93 | 0.00 | 0.93 | 0.93 | 0.91 | 0.95 |
77
- | thymic fibroblast type 1 | 2933 | 0.84 | 0.86 | 0.93 | 0.90 | 0.00 | 0.91 | 0.90 | 0.89 | 0.93 |
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- | CD8-positive, alpha-beta T cell | 2530 | 0.79 | 0.84 | 0.90 | 0.84 | 0.00 | 0.83 | 0.83 | 0.85 | 0.87 |
79
- | capillary endothelial cell | 2349 | 0.82 | 0.85 | 0.94 | 0.87 | 0.00 | 0.88 | 0.90 | 0.90 | 0.92 |
80
- | naive thymus-derived CD4-positive, alpha-beta T cell | 2267 | 0.48 | 0.41 | 0.66 | 0.55 | 0.00 | 0.57 | 0.52 | 0.57 | 0.65 |
81
- | smooth muscle cell | 2000 | 0.95 | 0.94 | 0.99 | 0.98 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |
82
- | vein endothelial cell | 1834 | 0.83 | 0.82 | 0.93 | 0.86 | 0.00 | 0.88 | 0.89 | 0.89 | 0.92 |
83
- | plasma cell | 1440 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |
84
- | endothelial cell of artery | 687 | 0.90 | 0.93 | 0.96 | 0.82 | 0.00 | 0.92 | 0.96 | 0.95 | 0.96 |
85
- | macrophage | 681 | 0.98 | 0.98 | 0.99 | 0.97 | 0.00 | 0.99 | 1.00 | 0.99 | 1.00 |
86
- | CD8-positive, alpha-beta thymocyte | 593 | 0.64 | 0.71 | 0.83 | 0.60 | 0.00 | 0.74 | 0.75 | 0.79 | 0.85 |
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- | thymocyte | 408 | 0.56 | 0.61 | 0.82 | 0.49 | 0.00 | 0.80 | 0.82 | 0.89 | 0.90 |
88
- | naive thymus-derived CD8-positive, alpha-beta T cell | 397 | 0.45 | 0.41 | 0.72 | 0.10 | 0.00 | 0.70 | 0.67 | 0.76 | 0.80 |
89
- | natural killer cell | 383 | 0.90 | 0.92 | 0.95 | 0.89 | 0.00 | 0.93 | 0.97 | 0.97 | 0.96 |
90
- | endothelial cell of lymphatic vessel | 336 | 0.97 | 0.98 | 0.98 | 0.94 | 0.00 | 0.96 | 0.99 | 0.97 | 0.98 |
91
- | fibroblast | 250 | 0.67 | 0.07 | 0.96 | 0.75 | 0.00 | 0.98 | 0.90 | 0.89 | 0.97 |
92
- | vascular associated smooth muscle cell | 226 | 0.65 | 0.01 | 0.96 | 0.79 | 0.00 | 0.97 | 0.97 | 0.97 | 0.98 |
93
- | mesothelial cell | 159 | 0.94 | 0.91 | 0.95 | 0.93 | 0.00 | 0.98 | 0.97 | 0.97 | 0.99 |
94
- | erythrocyte | 135 | 0.87 | 0.90 | 0.91 | 0.94 | 0.00 | 0.96 | 0.97 | 0.95 | 0.97 |
95
- | neuro-medullary thymic epithelial cell | 120 | 0.92 | 0.93 | 0.89 | 0.91 | 0.00 | 0.97 | 1.00 | 0.98 | 0.98 |
96
- | neutrophil | 109 | 0.61 | 0.74 | 0.91 | 0.84 | 0.00 | 0.96 | 1.00 | 1.00 | 1.00 |
97
- | hematopoietic precursor cell | 82 | 0.74 | 0.05 | 0.85 | 0.86 | 0.00 | 0.99 | 1.00 | 0.99 | 0.99 |
98
- | myo-medullary thymic epithelial cell | 72 | 0.85 | 0.82 | 0.96 | 0.94 | 0.00 | 0.97 | 0.99 | 1.00 | 0.98 |
99
- | medullary thymic epithelial cell | 36 | 0.84 | 0.67 | 0.87 | 0.70 | 0.00 | 0.90 | 1.00 | 0.99 | 0.97 |
100
- | monocyte | 25 | 0.00 | 0.00 | 0.87 | 0.70 | 0.00 | 0.94 | 1.00 | 0.98 | 1.00 |
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- | mast cell | 21 | 0.65 | 0.73 | 0.86 | 0.78 | 0.00 | 0.91 | 1.00 | 0.98 | 1.00 |
102
- | fast muscle cell | 21 | 0.00 | 0.00 | 0.98 | 0.77 | 0.00 | 1.00 | 1.00 | 1.00 | 0.98 |
103
- | T follicular helper cell | 6 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.29 | 0.80 | 0.80 | 0.83 |
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- | innate lymphoid cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.50 | 0.57 | 0.80 | 1.00 |
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- | endothelial cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.50 | 0.67 | 1.00 | 1.00 |
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  </details>
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33
  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
34
  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
35
+ | CD4-positive, alpha-beta T cell | 748 | 0.76 | 0.85 | 0.85 | 0.72 | 0.00 | 0.77 | 0.71 | 0.79 | 0.85 |
36
+ | CD4-positive, alpha-beta thymocyte | 447 | 0.70 | 0.52 | 0.76 | 0.63 | 0.00 | 0.60 | 0.61 | 0.70 | 0.74 |
37
+ | B cell | 450 | 1.00 | 0.99 | 0.99 | 1.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |
38
+ | thymic fibroblast type 2 | 378 | 0.84 | 0.88 | 0.89 | 0.82 | 0.00 | 0.91 | 0.89 | 0.89 | 0.92 |
39
+ | thymic fibroblast type 1 | 346 | 0.85 | 0.86 | 0.89 | 0.82 | 0.00 | 0.90 | 0.88 | 0.88 | 0.91 |
40
+ | CD8-positive, alpha-beta T cell | 275 | 0.79 | 0.86 | 0.86 | 0.82 | 0.00 | 0.86 | 0.79 | 0.86 | 0.87 |
41
+ | capillary endothelial cell | 270 | 0.79 | 0.84 | 0.90 | 0.79 | 0.00 | 0.83 | 0.83 | 0.82 | 0.86 |
42
+ | naive thymus-derived CD4-positive, alpha-beta T cell | 259 | 0.48 | 0.44 | 0.51 | 0.31 | 0.00 | 0.49 | 0.35 | 0.51 | 0.54 |
43
+ | smooth muscle cell | 228 | 0.98 | 0.97 | 0.97 | 0.98 | 0.00 | 0.99 | 0.98 | 0.98 | 0.99 |
44
+ | vein endothelial cell | 213 | 0.82 | 0.82 | 0.90 | 0.77 | 0.00 | 0.84 | 0.84 | 0.84 | 0.87 |
45
+ | plasma cell | 136 | 1.00 | 0.98 | 0.99 | 0.99 | 0.00 | 1.00 | 0.99 | 0.99 | 0.99 |
46
+ | endothelial cell of artery | 85 | 0.90 | 0.94 | 0.91 | 0.69 | 0.00 | 0.85 | 0.89 | 0.90 | 0.92 |
47
+ | macrophage | 86 | 0.98 | 0.98 | 0.97 | 0.98 | 0.00 | 0.98 | 0.99 | 1.00 | 0.99 |
48
+ | CD8-positive, alpha-beta thymocyte | 71 | 0.68 | 0.78 | 0.85 | 0.52 | 0.00 | 0.72 | 0.67 | 0.73 | 0.82 |
49
+ | thymocyte | 45 | 0.63 | 0.71 | 0.83 | 0.36 | 0.00 | 0.78 | 0.67 | 0.80 | 0.79 |
50
+ | naive thymus-derived CD8-positive, alpha-beta T cell | 34 | 0.46 | 0.53 | 0.63 | 0.14 | 0.00 | 0.50 | 0.52 | 0.57 | 0.72 |
51
+ | natural killer cell | 46 | 0.89 | 0.97 | 0.93 | 0.92 | 0.00 | 0.90 | 0.94 | 0.94 | 0.98 |
52
+ | endothelial cell of lymphatic vessel | 35 | 1.00 | 1.00 | 0.99 | 0.96 | 0.00 | 0.95 | 1.00 | 1.00 | 1.00 |
53
+ | fibroblast | 23 | 0.46 | 0.22 | 0.18 | 0.77 | 0.00 | 0.73 | 0.79 | 0.75 | 0.84 |
54
+ | vascular associated smooth muscle cell | 12 | 0.67 | 0.00 | 0.27 | 0.74 | 0.00 | 0.83 | 0.92 | 0.89 | 0.91 |
55
+ | mesothelial cell | 16 | 0.93 | 0.93 | 0.97 | 0.88 | 0.00 | 0.91 | 0.94 | 0.88 | 0.97 |
56
+ | erythrocyte | 18 | 0.91 | 1.00 | 0.91 | 0.94 | 0.00 | 0.94 | 0.97 | 0.97 | 0.97 |
57
+ | neuro-medullary thymic epithelial cell | 14 | 0.96 | 0.96 | 0.92 | 0.96 | 0.00 | 0.93 | 1.00 | 0.96 | 1.00 |
58
+ | neutrophil | 12 | 0.74 | 0.79 | 0.92 | 0.92 | 0.00 | 0.92 | 0.92 | 0.83 | 0.88 |
59
+ | hematopoietic precursor cell | 10 | 0.80 | 0.18 | 0.95 | 0.90 | 0.00 | 0.90 | 0.89 | 0.82 | 0.84 |
60
+ | myo-medullary thymic epithelial cell | 5 | 0.91 | 0.91 | 0.89 | 0.91 | 0.00 | 0.91 | 0.91 | 0.91 | 0.91 |
61
+ | medullary thymic epithelial cell | 7 | 1.00 | 0.83 | 0.92 | 0.62 | 0.00 | 0.88 | 0.92 | 1.00 | 1.00 |
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+ | monocyte | 2 | 0.00 | 0.00 | 0.80 | 0.00 | 0.00 | 0.67 | 0.67 | 1.00 | 0.67 |
63
+ | mast cell | 2 | 1.00 | 1.00 | 0.67 | 0.00 | 0.00 | 0.40 | 1.00 | 1.00 | 1.00 |
64
  | fast muscle cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
65
  | T follicular helper cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
66
  | innate lymphoid cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
 
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71
  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
72
  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
73
+ | CD4-positive, alpha-beta T cell | 6378 | 0.75 | 0.81 | 0.89 | 0.79 | 0.00 | 0.78 | 0.74 | 0.78 | 0.86 |
74
+ | CD4-positive, alpha-beta thymocyte | 4116 | 0.72 | 0.44 | 0.85 | 0.78 | 0.00 | 0.74 | 0.69 | 0.75 | 0.81 |
75
+ | B cell | 4012 | 1.00 | 0.99 | 1.00 | 1.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |
76
+ | thymic fibroblast type 2 | 3827 | 0.88 | 0.90 | 0.94 | 0.90 | 0.00 | 0.93 | 0.92 | 0.92 | 0.95 |
77
+ | thymic fibroblast type 1 | 2924 | 0.86 | 0.86 | 0.93 | 0.87 | 0.00 | 0.91 | 0.90 | 0.90 | 0.93 |
78
+ | CD8-positive, alpha-beta T cell | 2542 | 0.79 | 0.84 | 0.90 | 0.85 | 0.00 | 0.82 | 0.82 | 0.84 | 0.87 |
79
+ | capillary endothelial cell | 2351 | 0.79 | 0.85 | 0.94 | 0.87 | 0.00 | 0.88 | 0.89 | 0.88 | 0.91 |
80
+ | naive thymus-derived CD4-positive, alpha-beta T cell | 2264 | 0.48 | 0.41 | 0.67 | 0.55 | 0.00 | 0.55 | 0.50 | 0.55 | 0.64 |
81
+ | smooth muscle cell | 1997 | 0.96 | 0.94 | 0.99 | 0.98 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |
82
+ | vein endothelial cell | 1835 | 0.82 | 0.82 | 0.93 | 0.83 | 0.00 | 0.87 | 0.89 | 0.88 | 0.91 |
83
+ | plasma cell | 1442 | 0.99 | 0.99 | 0.99 | 1.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |
84
+ | endothelial cell of artery | 688 | 0.89 | 0.92 | 0.96 | 0.78 | 0.00 | 0.93 | 0.94 | 0.94 | 0.96 |
85
+ | macrophage | 684 | 0.98 | 0.98 | 0.99 | 0.97 | 0.00 | 0.98 | 1.00 | 1.00 | 0.99 |
86
+ | CD8-positive, alpha-beta thymocyte | 601 | 0.64 | 0.70 | 0.82 | 0.63 | 0.00 | 0.78 | 0.79 | 0.82 | 0.86 |
87
+ | thymocyte | 410 | 0.66 | 0.67 | 0.83 | 0.49 | 0.00 | 0.84 | 0.81 | 0.88 | 0.92 |
88
+ | naive thymus-derived CD8-positive, alpha-beta T cell | 400 | 0.46 | 0.45 | 0.73 | 0.18 | 0.00 | 0.69 | 0.66 | 0.75 | 0.77 |
89
+ | natural killer cell | 382 | 0.86 | 0.90 | 0.93 | 0.90 | 0.00 | 0.91 | 0.96 | 0.96 | 0.96 |
90
+ | endothelial cell of lymphatic vessel | 336 | 0.97 | 0.97 | 0.98 | 0.93 | 0.00 | 0.95 | 0.99 | 0.97 | 0.99 |
91
+ | fibroblast | 249 | 0.65 | 0.07 | 0.96 | 0.89 | 0.00 | 0.97 | 0.89 | 0.91 | 0.96 |
92
+ | vascular associated smooth muscle cell | 229 | 0.69 | 0.03 | 0.96 | 0.86 | 0.00 | 0.97 | 0.97 | 0.95 | 0.98 |
93
+ | mesothelial cell | 159 | 0.94 | 0.90 | 0.96 | 0.93 | 0.00 | 0.98 | 0.97 | 0.97 | 0.98 |
94
+ | erythrocyte | 134 | 0.94 | 0.91 | 0.93 | 0.95 | 0.00 | 0.97 | 0.98 | 0.94 | 0.98 |
95
+ | neuro-medullary thymic epithelial cell | 121 | 0.92 | 0.91 | 0.90 | 0.90 | 0.00 | 0.98 | 1.00 | 0.98 | 0.98 |
96
+ | neutrophil | 109 | 0.61 | 0.73 | 0.90 | 0.85 | 0.00 | 0.97 | 1.00 | 1.00 | 1.00 |
97
+ | hematopoietic precursor cell | 82 | 0.74 | 0.07 | 0.89 | 0.87 | 0.00 | 0.97 | 1.00 | 0.99 | 0.99 |
98
+ | myo-medullary thymic epithelial cell | 72 | 0.85 | 0.87 | 0.96 | 0.95 | 0.00 | 0.98 | 0.99 | 0.99 | 0.97 |
99
+ | medullary thymic epithelial cell | 36 | 0.83 | 0.62 | 0.87 | 0.67 | 0.00 | 0.96 | 1.00 | 1.00 | 0.96 |
100
+ | monocyte | 24 | 0.00 | 0.00 | 0.82 | 0.42 | 0.00 | 0.84 | 1.00 | 0.98 | 0.93 |
101
+ | mast cell | 22 | 0.88 | 0.77 | 0.87 | 0.71 | 0.00 | 0.78 | 0.96 | 1.00 | 1.00 |
102
+ | fast muscle cell | 21 | 0.00 | 0.28 | 0.98 | 0.85 | 0.00 | 0.98 | 1.00 | 1.00 | 0.98 |
103
+ | T follicular helper cell | 6 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.33 | 0.86 | 0.75 | 0.83 |
104
+ | innate lymphoid cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.80 | 0.50 | 1.00 | 1.00 |
105
+ | endothelial cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 0.67 | 1.00 | 1.00 |
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  </details>
108