| { | |
| "query_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| CD4-positive, alpha-beta T cell | 748 | 0.76 | 0.85 | 0.85 | 0.72 | 0.00 | 0.77 | 0.71 | 0.79 | 0.85 |\n| CD4-positive, alpha-beta thymocyte | 447 | 0.70 | 0.52 | 0.76 | 0.63 | 0.00 | 0.60 | 0.61 | 0.70 | 0.74 |\n| B cell | 450 | 1.00 | 0.99 | 0.99 | 1.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| thymic fibroblast type 2 | 378 | 0.84 | 0.88 | 0.89 | 0.82 | 0.00 | 0.91 | 0.89 | 0.89 | 0.92 |\n| thymic fibroblast type 1 | 346 | 0.85 | 0.86 | 0.89 | 0.82 | 0.00 | 0.90 | 0.88 | 0.88 | 0.91 |\n| CD8-positive, alpha-beta T cell | 275 | 0.79 | 0.86 | 0.86 | 0.82 | 0.00 | 0.86 | 0.79 | 0.86 | 0.87 |\n| capillary endothelial cell | 270 | 0.79 | 0.84 | 0.90 | 0.79 | 0.00 | 0.83 | 0.83 | 0.82 | 0.86 |\n| naive thymus-derived CD4-positive, alpha-beta T cell | 259 | 0.48 | 0.44 | 0.51 | 0.31 | 0.00 | 0.49 | 0.35 | 0.51 | 0.54 |\n| smooth muscle cell | 228 | 0.98 | 0.97 | 0.97 | 0.98 | 0.00 | 0.99 | 0.98 | 0.98 | 0.99 |\n| vein endothelial cell | 213 | 0.82 | 0.82 | 0.90 | 0.77 | 0.00 | 0.84 | 0.84 | 0.84 | 0.87 |\n| plasma cell | 136 | 1.00 | 0.98 | 0.99 | 0.99 | 0.00 | 1.00 | 0.99 | 0.99 | 0.99 |\n| endothelial cell of artery | 85 | 0.90 | 0.94 | 0.91 | 0.69 | 0.00 | 0.85 | 0.89 | 0.90 | 0.92 |\n| macrophage | 86 | 0.98 | 0.98 | 0.97 | 0.98 | 0.00 | 0.98 | 0.99 | 1.00 | 0.99 |\n| CD8-positive, alpha-beta thymocyte | 71 | 0.68 | 0.78 | 0.85 | 0.52 | 0.00 | 0.72 | 0.67 | 0.73 | 0.82 |\n| thymocyte | 45 | 0.63 | 0.71 | 0.83 | 0.36 | 0.00 | 0.78 | 0.67 | 0.80 | 0.79 |\n| naive thymus-derived CD8-positive, alpha-beta T cell | 34 | 0.46 | 0.53 | 0.63 | 0.14 | 0.00 | 0.50 | 0.52 | 0.57 | 0.72 |\n| natural killer cell | 46 | 0.89 | 0.97 | 0.93 | 0.92 | 0.00 | 0.90 | 0.94 | 0.94 | 0.98 |\n| endothelial cell of lymphatic vessel | 35 | 1.00 | 1.00 | 0.99 | 0.96 | 0.00 | 0.95 | 1.00 | 1.00 | 1.00 |\n| fibroblast | 23 | 0.46 | 0.22 | 0.18 | 0.77 | 0.00 | 0.73 | 0.79 | 0.75 | 0.84 |\n| vascular associated smooth muscle cell | 12 | 0.67 | 0.00 | 0.27 | 0.74 | 0.00 | 0.83 | 0.92 | 0.89 | 0.91 |\n| mesothelial cell | 16 | 0.93 | 0.93 | 0.97 | 0.88 | 0.00 | 0.91 | 0.94 | 0.88 | 0.97 |\n| erythrocyte | 18 | 0.91 | 1.00 | 0.91 | 0.94 | 0.00 | 0.94 | 0.97 | 0.97 | 0.97 |\n| neuro-medullary thymic epithelial cell | 14 | 0.96 | 0.96 | 0.92 | 0.96 | 0.00 | 0.93 | 1.00 | 0.96 | 1.00 |\n| neutrophil | 12 | 0.74 | 0.79 | 0.92 | 0.92 | 0.00 | 0.92 | 0.92 | 0.83 | 0.88 |\n| hematopoietic precursor cell | 10 | 0.80 | 0.18 | 0.95 | 0.90 | 0.00 | 0.90 | 0.89 | 0.82 | 0.84 |\n| myo-medullary thymic epithelial cell | 5 | 0.91 | 0.91 | 0.89 | 0.91 | 0.00 | 0.91 | 0.91 | 0.91 | 0.91 |\n| medullary thymic epithelial cell | 7 | 1.00 | 0.83 | 0.92 | 0.62 | 0.00 | 0.88 | 0.92 | 1.00 | 1.00 |\n| monocyte | 2 | 0.00 | 0.00 | 0.80 | 0.00 | 0.00 | 0.67 | 0.67 | 1.00 | 0.67 |\n| mast cell | 2 | 1.00 | 1.00 | 0.67 | 0.00 | 0.00 | 0.40 | 1.00 | 1.00 | 1.00 |\n| fast muscle cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| T follicular helper cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| innate lymphoid cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| endothelial cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |", | |
| "ref_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| CD4-positive, alpha-beta T cell | 6378 | 0.75 | 0.81 | 0.89 | 0.79 | 0.00 | 0.78 | 0.74 | 0.78 | 0.86 |\n| CD4-positive, alpha-beta thymocyte | 4116 | 0.72 | 0.44 | 0.85 | 0.78 | 0.00 | 0.74 | 0.69 | 0.75 | 0.81 |\n| B cell | 4012 | 1.00 | 0.99 | 1.00 | 1.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| thymic fibroblast type 2 | 3827 | 0.88 | 0.90 | 0.94 | 0.90 | 0.00 | 0.93 | 0.92 | 0.92 | 0.95 |\n| thymic fibroblast type 1 | 2924 | 0.86 | 0.86 | 0.93 | 0.87 | 0.00 | 0.91 | 0.90 | 0.90 | 0.93 |\n| CD8-positive, alpha-beta T cell | 2542 | 0.79 | 0.84 | 0.90 | 0.85 | 0.00 | 0.82 | 0.82 | 0.84 | 0.87 |\n| capillary endothelial cell | 2351 | 0.79 | 0.85 | 0.94 | 0.87 | 0.00 | 0.88 | 0.89 | 0.88 | 0.91 |\n| naive thymus-derived CD4-positive, alpha-beta T cell | 2264 | 0.48 | 0.41 | 0.67 | 0.55 | 0.00 | 0.55 | 0.50 | 0.55 | 0.64 |\n| smooth muscle cell | 1997 | 0.96 | 0.94 | 0.99 | 0.98 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |\n| vein endothelial cell | 1835 | 0.82 | 0.82 | 0.93 | 0.83 | 0.00 | 0.87 | 0.89 | 0.88 | 0.91 |\n| plasma cell | 1442 | 0.99 | 0.99 | 0.99 | 1.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| endothelial cell of artery | 688 | 0.89 | 0.92 | 0.96 | 0.78 | 0.00 | 0.93 | 0.94 | 0.94 | 0.96 |\n| macrophage | 684 | 0.98 | 0.98 | 0.99 | 0.97 | 0.00 | 0.98 | 1.00 | 1.00 | 0.99 |\n| CD8-positive, alpha-beta thymocyte | 601 | 0.64 | 0.70 | 0.82 | 0.63 | 0.00 | 0.78 | 0.79 | 0.82 | 0.86 |\n| thymocyte | 410 | 0.66 | 0.67 | 0.83 | 0.49 | 0.00 | 0.84 | 0.81 | 0.88 | 0.92 |\n| naive thymus-derived CD8-positive, alpha-beta T cell | 400 | 0.46 | 0.45 | 0.73 | 0.18 | 0.00 | 0.69 | 0.66 | 0.75 | 0.77 |\n| natural killer cell | 382 | 0.86 | 0.90 | 0.93 | 0.90 | 0.00 | 0.91 | 0.96 | 0.96 | 0.96 |\n| endothelial cell of lymphatic vessel | 336 | 0.97 | 0.97 | 0.98 | 0.93 | 0.00 | 0.95 | 0.99 | 0.97 | 0.99 |\n| fibroblast | 249 | 0.65 | 0.07 | 0.96 | 0.89 | 0.00 | 0.97 | 0.89 | 0.91 | 0.96 |\n| vascular associated smooth muscle cell | 229 | 0.69 | 0.03 | 0.96 | 0.86 | 0.00 | 0.97 | 0.97 | 0.95 | 0.98 |\n| mesothelial cell | 159 | 0.94 | 0.90 | 0.96 | 0.93 | 0.00 | 0.98 | 0.97 | 0.97 | 0.98 |\n| erythrocyte | 134 | 0.94 | 0.91 | 0.93 | 0.95 | 0.00 | 0.97 | 0.98 | 0.94 | 0.98 |\n| neuro-medullary thymic epithelial cell | 121 | 0.92 | 0.91 | 0.90 | 0.90 | 0.00 | 0.98 | 1.00 | 0.98 | 0.98 |\n| neutrophil | 109 | 0.61 | 0.73 | 0.90 | 0.85 | 0.00 | 0.97 | 1.00 | 1.00 | 1.00 |\n| hematopoietic precursor cell | 82 | 0.74 | 0.07 | 0.89 | 0.87 | 0.00 | 0.97 | 1.00 | 0.99 | 0.99 |\n| myo-medullary thymic epithelial cell | 72 | 0.85 | 0.87 | 0.96 | 0.95 | 0.00 | 0.98 | 0.99 | 0.99 | 0.97 |\n| medullary thymic epithelial cell | 36 | 0.83 | 0.62 | 0.87 | 0.67 | 0.00 | 0.96 | 1.00 | 1.00 | 0.96 |\n| monocyte | 24 | 0.00 | 0.00 | 0.82 | 0.42 | 0.00 | 0.84 | 1.00 | 0.98 | 0.93 |\n| mast cell | 22 | 0.88 | 0.77 | 0.87 | 0.71 | 0.00 | 0.78 | 0.96 | 1.00 | 1.00 |\n| fast muscle cell | 21 | 0.00 | 0.28 | 0.98 | 0.85 | 0.00 | 0.98 | 1.00 | 1.00 | 0.98 |\n| T follicular helper cell | 6 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.33 | 0.86 | 0.75 | 0.83 |\n| innate lymphoid cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.80 | 0.50 | 1.00 | 1.00 |\n| endothelial cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 0.67 | 1.00 | 1.00 |" | |
| } |