### A Pluto.jl notebook ###
# v0.17.3

using Markdown
using InteractiveUtils

# This Pluto notebook uses @bind for interactivity. When running this notebook outside of Pluto, the following 'mock version' of @bind gives bound variables a default value (instead of an error).
macro bind(def, element)
    quote
        local iv = try Base.loaded_modules[Base.PkgId(Base.UUID("6e696c72-6542-2067-7265-42206c756150"), "AbstractPlutoDingetjes")].Bonds.initial_value catch; b -> missing; end
        local el = $(esc(element))
        global $(esc(def)) = Core.applicable(Base.get, el) ? Base.get(el) : iv(el)
        el
    end
end

# ╔═╡ 8cf4d8ca-84eb-11eb-22d2-255ce7237090
begin
	using MITgcmTools, PlutoUI, Printf
	exps=verification_experiments()
end

# ╔═╡ f588eaba-84ef-11eb-0755-bf1b85b2b561
begin
md"""# Standard MITgcm configurations

This notebook scans configuration folders of [MITgcm](https://mitgcm.readthedocs.io/en/latest/?badge=latest) within `MITgcm/verification` using [MITgcmTools.jl](https://gaelforget.github.io/MITgcmTools.jl/dev/). It then let's user inspect parameters interactively. 

!!! tip
	For more on compiling and running a model configuration, please refer to the [examples deck](https://gaelforget.github.io/MITgcmTools.jl/dev/examples/) for more on that topic.

"""
end

# ╔═╡ 98b6621c-85ab-11eb-29d1-af0433598c6a
md"""## Select Model Configuration

$(TableOfContents())

!!! note
	If you use a live version of this notebook, selecting a different configuration from the list below will make the other notebook cells react (e.g. displayed contents). If you visualize an html version of this notebook, then cells wont react.
"""

# ╔═╡ a28f7354-84eb-11eb-1830-1f401bf2db97
@bind myexp Select([exps[i].configuration for i in 1:length(exps)],default="advect_cs")

# ╔═╡ f051e094-85ab-11eb-22d4-5bd61ac572a1
md"""## Select Parameter Group

Each configuration has various groups of parameters, often called namelists, depending on compiled packages. The dropdown menus below let you navigate the various parameter groups -- the result is show in the next section.

The chosen defaults, `data` and `PARM01`, are expected to be found in any MITgcm run directory. However, there can be many more parameters. 
"""

# ╔═╡ f40e76c4-86d5-11eb-15b0-cd55d6cd1e65
md"""### Appendices

The following cells select Julia packages and perform basic operations.
"""

# ╔═╡ 168e178c-dd09-4e27-8cb6-fc0479a55f75
begin
	🏁 = "🏁"
	imgA="https://user-images.githubusercontent.com/20276764/111042787-12377e00-840d-11eb-8ddb-64cc1cfd57fd.png"
	imgB="https://user-images.githubusercontent.com/20276764/97648227-970b9780-1a2a-11eb-81c4-65ec2c87efc6.png"
	md"""$(Resource(imgB, :width => 120))"""
end

# ╔═╡ 4965715d-93ca-496b-8ab1-238e9c6e34b4
begin
	iexp=findall([exps[i].configuration==myexp for i in 1:length(exps)])[1]
	builddir=joinpath(MITgcm_path[1],"verification",myexp)
	rundir=joinpath(exps[iexp].folder,string(exps[iexp].ID),"run")
	!isdir(rundir) ? setup(exps[iexp]) : nothing
	🏁
end

# ╔═╡ d7f2c656-8512-11eb-2fdf-47a3e57a55e6
begin	
	function list_namelist_files(pth)
		tmpA=readdir(pth)
		tmpA=tmpA[findall([length(tmpA[i])>3 for i in 1:length(tmpA)])]
		tmpA=tmpA[findall([tmpA[i][1:4]=="data" for i in 1:length(tmpA)])]
		tmpA=[tmpA[:];"eedata"]
	end
	
	dats=list_namelist_files(rundir)
	try
		@bind mydats Select([dats[i] for i in 1:length(dats)])
	catch e
		"Error: could not find any namelist in $(pth)"
	end
end

# ╔═╡ 348c692e-84fe-11eb-3288-dd0a1dedce90
begin
	fil=joinpath(rundir,mydats)
	nml=read(fil,MITgcm_namelist())
	🏁
end

# ╔═╡ ca7bb004-8510-11eb-379f-632c3b40723d
try
	@bind nmlgroup Select(String.(nml.groups))
catch e
	"Error: could not find any namelist in $(rundir)"
end

# ╔═╡ e73fda3a-f05a-49b4-a83d-e7b535467106
md"""## Browse Parameters

#

Now displaying 👉 **$myexp / $mydats : $nmlgroup**"""

# ╔═╡ 9bdb94da-8510-11eb-01a6-c9a1519baa68
begin
	inml=findall(nml.groups.==Symbol(nmlgroup))[1]
	🏁
end

# ╔═╡ e50726aa-86d3-11eb-0418-fff8fb79ef95
nml.params[inml]

# ╔═╡ 00000000-0000-0000-0000-000000000001
PLUTO_PROJECT_TOML_CONTENTS = """
[deps]
MITgcmTools = "62725fbc-3a66-4df3-9000-e33e85b3a198"
PlutoUI = "7f904dfe-b85e-4ff6-b463-dae2292396a8"
Printf = "de0858da-6303-5e67-8744-51eddeeeb8d7"

[compat]
MITgcmTools = "~0.1.32"
PlutoUI = "~0.7.25"
"""

# ╔═╡ 00000000-0000-0000-0000-000000000002
PLUTO_MANIFEST_TOML_CONTENTS = """
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[[deps.MbedTLS_jll]]
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uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1"

[[deps.MeshArrays]]
deps = ["CatViews", "Dates", "Downloads", "LazyArtifacts", "NearestNeighbors", "Pkg", "Printf", "SparseArrays", "Statistics", "Unitful"]
git-tree-sha1 = "c5b9b98540a900934d9b531f8a153ce49016cec7"
uuid = "cb8c808f-1acf-59a3-9d2b-6e38d009f683"
version = "0.2.31"

[[deps.Missings]]
deps = ["DataAPI"]
git-tree-sha1 = "bf210ce90b6c9eed32d25dbcae1ebc565df2687f"
uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28"
version = "1.0.2"

[[deps.Mmap]]
uuid = "a63ad114-7e13-5084-954f-fe012c677804"

[[deps.Mocking]]
deps = ["Compat", "ExprTools"]
git-tree-sha1 = "29714d0a7a8083bba8427a4fbfb00a540c681ce7"
uuid = "78c3b35d-d492-501b-9361-3d52fe80e533"
version = "0.7.3"

[[deps.MozillaCACerts_jll]]
uuid = "14a3606d-f60d-562e-9121-12d972cd8159"

[[deps.NearestNeighbors]]
deps = ["Distances", "StaticArrays"]
git-tree-sha1 = "16baacfdc8758bc374882566c9187e785e85c2f0"
uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce"
version = "0.4.9"

[[deps.NetCDF]]
deps = ["DiskArrays", "Formatting", "NetCDF_jll"]
git-tree-sha1 = "23b0e32fde256a4e2e497e678abcf956ed26204b"
uuid = "30363a11-5582-574a-97bb-aa9a979735b9"
version = "0.11.3"

[[deps.NetCDF_jll]]
deps = ["Artifacts", "HDF5_jll", "JLLWrappers", "LibCURL_jll", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Pkg", "Zlib_jll", "nghttp2_jll"]
git-tree-sha1 = "0cf4d1bf2ef45156aed85c9ac5f8c7e697d9288c"
uuid = "7243133f-43d8-5620-bbf4-c2c921802cf3"
version = "400.702.400+0"

[[deps.NetworkOptions]]
uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908"

[[deps.OffsetArrays]]
deps = ["Adapt"]
git-tree-sha1 = "043017e0bdeff61cfbb7afeb558ab29536bbb5ed"
uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881"
version = "1.10.8"

[[deps.OpenBLAS_jll]]
deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"]
uuid = "4536629a-c528-5b80-bd46-f80d51c5b363"

[[deps.OpenSSL_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "15003dcb7d8db3c6c857fda14891a539a8f2705a"
uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95"
version = "1.1.10+0"

[[deps.OrderedCollections]]
git-tree-sha1 = "85f8e6578bf1f9ee0d11e7bb1b1456435479d47c"
uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d"
version = "1.4.1"

[[deps.PCRE2_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15"

[[deps.Parsers]]
deps = ["Dates"]
git-tree-sha1 = "d7fa6237da8004be601e19bd6666083056649918"
uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0"
version = "2.1.3"

[[deps.Pkg]]
deps = ["Artifacts", "Dates", "Downloads", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"]
uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"

[[deps.PlutoUI]]
deps = ["AbstractPlutoDingetjes", "Base64", "ColorTypes", "Dates", "Hyperscript", "HypertextLiteral", "IOCapture", "InteractiveUtils", "JSON", "Logging", "Markdown", "Random", "Reexport", "UUIDs"]
git-tree-sha1 = "93cf0910f09a9607add290a3a2585aa376b4feb6"
uuid = "7f904dfe-b85e-4ff6-b463-dae2292396a8"
version = "0.7.25"

[[deps.PooledArrays]]
deps = ["DataAPI", "Future"]
git-tree-sha1 = "db3a23166af8aebf4db5ef87ac5b00d36eb771e2"
uuid = "2dfb63ee-cc39-5dd5-95bd-886bf059d720"
version = "1.4.0"

[[deps.Preferences]]
deps = ["TOML"]
git-tree-sha1 = "00cfd92944ca9c760982747e9a1d0d5d86ab1e5a"
uuid = "21216c6a-2e73-6563-6e65-726566657250"
version = "1.2.2"

[[deps.PrettyTables]]
deps = ["Crayons", "Formatting", "Markdown", "Reexport", "Tables"]
git-tree-sha1 = "b7ff9f9ce50eab241e978cd975ad4ae113f5a41f"
uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d"
version = "1.3.0"

[[deps.Printf]]
deps = ["Unicode"]
uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7"

[[deps.REPL]]
deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"]
uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb"

[[deps.Random]]
deps = ["SHA", "Serialization"]
uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"

[[deps.Reexport]]
git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b"
uuid = "189a3867-3050-52da-a836-e630ba90ab69"
version = "1.2.2"

[[deps.Retry]]
git-tree-sha1 = "41ac127cd281bb33e42aba46a9d3b25cd35fc6d5"
uuid = "20febd7b-183b-5ae2-ac4a-720e7ce64774"
version = "0.4.1"

[[deps.SHA]]
uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce"

[[deps.SentinelArrays]]
deps = ["Dates", "Random"]
git-tree-sha1 = "244586bc07462d22aed0113af9c731f2a518c93e"
uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c"
version = "1.3.10"

[[deps.Serialization]]
uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b"

[[deps.SharedArrays]]
deps = ["Distributed", "Mmap", "Random", "Serialization"]
uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383"

[[deps.Sockets]]
uuid = "6462fe0b-24de-5631-8697-dd941f90decc"

[[deps.SodiumSeal]]
deps = ["Base64", "Libdl", "libsodium_jll"]
git-tree-sha1 = "80cef67d2953e33935b41c6ab0a178b9987b1c99"
uuid = "2133526b-2bfb-4018-ac12-889fb3908a75"
version = "0.1.1"

[[deps.SortingAlgorithms]]
deps = ["DataStructures"]
git-tree-sha1 = "b3363d7460f7d098ca0912c69b082f75625d7508"
uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c"
version = "1.0.1"

[[deps.SparseArrays]]
deps = ["LinearAlgebra", "Random"]
uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"

[[deps.StaticArrays]]
deps = ["LinearAlgebra", "Random", "Statistics"]
git-tree-sha1 = "3c76dde64d03699e074ac02eb2e8ba8254d428da"
uuid = "90137ffa-7385-5640-81b9-e52037218182"
version = "1.2.13"

[[deps.Statistics]]
deps = ["LinearAlgebra", "SparseArrays"]
uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"

[[deps.StatsAPI]]
git-tree-sha1 = "0f2aa8e32d511f758a2ce49208181f7733a0936a"
uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0"
version = "1.1.0"

[[deps.Suppressor]]
git-tree-sha1 = "a819d77f31f83e5792a76081eee1ea6342ab8787"
uuid = "fd094767-a336-5f1f-9728-57cf17d0bbfb"
version = "0.2.0"

[[deps.TOML]]
deps = ["Dates"]
uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76"

[[deps.TableTraits]]
deps = ["IteratorInterfaceExtensions"]
git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39"
uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c"
version = "1.0.1"

[[deps.Tables]]
deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "TableTraits", "Test"]
git-tree-sha1 = "bb1064c9a84c52e277f1096cf41434b675cd368b"
uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c"
version = "1.6.1"

[[deps.Tar]]
deps = ["ArgTools", "SHA"]
uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e"

[[deps.Test]]
deps = ["InteractiveUtils", "Logging", "Random", "Serialization"]
uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40"

[[deps.TranscodingStreams]]
deps = ["Random", "Test"]
git-tree-sha1 = "216b95ea110b5972db65aa90f88d8d89dcb8851c"
uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa"
version = "0.9.6"

[[deps.URIs]]
git-tree-sha1 = "97bbe755a53fe859669cd907f2d96aee8d2c1355"
uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4"
version = "1.3.0"

[[deps.UUIDs]]
deps = ["Random", "SHA"]
uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4"

[[deps.Unicode]]
uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5"

[[deps.Unitful]]
deps = ["ConstructionBase", "Dates", "LinearAlgebra", "Random"]
git-tree-sha1 = "0992ed0c3ef66b0390e5752fe60054e5ff93b908"
uuid = "1986cc42-f94f-5a68-af5c-568840ba703d"
version = "1.9.2"

[[deps.WeakRefStrings]]
deps = ["DataAPI", "InlineStrings", "Parsers"]
git-tree-sha1 = "c69f9da3ff2f4f02e811c3323c22e5dfcb584cfa"
uuid = "ea10d353-3f73-51f8-a26c-33c1cb351aa5"
version = "1.4.1"

[[deps.XML2_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "Zlib_jll"]
git-tree-sha1 = "1acf5bdf07aa0907e0a37d3718bb88d4b687b74a"
uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a"
version = "2.9.12+0"

[[deps.XMLDict]]
deps = ["EzXML", "IterTools", "OrderedCollections"]
git-tree-sha1 = "d9a3faf078210e477b291c79117676fca54da9dd"
uuid = "228000da-037f-5747-90a9-8195ccbf91a5"
version = "0.4.1"

[[deps.Zarr]]
deps = ["AWS", "Blosc", "CodecZlib", "DataStructures", "Dates", "DiskArrays", "HTTP", "JSON", "LRUCache", "OffsetArrays", "Pkg", "URIs"]
git-tree-sha1 = "7238cf588d2def313a65b63ea9bba07aa762f26b"
uuid = "0a941bbe-ad1d-11e8-39d9-ab76183a1d99"
version = "0.7.0"

[[deps.Zlib_jll]]
deps = ["Libdl"]
uuid = "83775a58-1f1d-513f-b197-d71354ab007a"

[[deps.Zstd_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "cc4bf3fdde8b7e3e9fa0351bdeedba1cf3b7f6e6"
uuid = "3161d3a3-bdf6-5164-811a-617609db77b4"
version = "1.5.0+0"

[[deps.libblastrampoline_jll]]
deps = ["Artifacts", "Libdl", "OpenBLAS_jll"]
uuid = "8e850b90-86db-534c-a0d3-1478176c7d93"

[[deps.libsodium_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "848ab3d00fe39d6fbc2a8641048f8f272af1c51e"
uuid = "a9144af2-ca23-56d9-984f-0d03f7b5ccf8"
version = "1.0.20+0"

[[deps.nghttp2_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d"

[[deps.p7zip_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0"
"""

# ╔═╡ Cell order:
# ╟─f588eaba-84ef-11eb-0755-bf1b85b2b561
# ╟─98b6621c-85ab-11eb-29d1-af0433598c6a
# ╟─a28f7354-84eb-11eb-1830-1f401bf2db97
# ╟─f051e094-85ab-11eb-22d4-5bd61ac572a1
# ╟─d7f2c656-8512-11eb-2fdf-47a3e57a55e6
# ╟─ca7bb004-8510-11eb-379f-632c3b40723d
# ╟─e73fda3a-f05a-49b4-a83d-e7b535467106
# ╟─e50726aa-86d3-11eb-0418-fff8fb79ef95
# ╟─f40e76c4-86d5-11eb-15b0-cd55d6cd1e65
# ╟─8cf4d8ca-84eb-11eb-22d2-255ce7237090
# ╟─9bdb94da-8510-11eb-01a6-c9a1519baa68
# ╟─348c692e-84fe-11eb-3288-dd0a1dedce90
# ╟─4965715d-93ca-496b-8ab1-238e9c6e34b4
# ╟─168e178c-dd09-4e27-8cb6-fc0479a55f75
# ╟─00000000-0000-0000-0000-000000000001
# ╟─00000000-0000-0000-0000-000000000002
