module MarkovBounds

using Reexport
using SumOfSquares

# SumOfSquares and DynamicPolynomials are the main modeling tools to set up
# moment bounding problems --> Reexport those
@reexport using SumOfSquares: @set, SemialgebraicSets, FullSpace

@reexport using DynamicPolynomials: @polyvar, PolyVar, AbstractPolynomialLike,
                                    Polynomial, Term, subs, polynomial, differentiate,
                                    MonomialVector, maxdegree

# MTK/Symbolics/SymbolicUtils/Catalyst can also be used to specify moment problem
# data but not as its main approach
using Catalyst: @reaction_network, @parameters, species, speciesmap,
                reactions, paramsmap, prodstoichmat, substoichmat,
                ReactionSystem, Reaction

using Symbolics: Num, expand
using SymbolicUtils: Add, Mul, Pow, Sym, arguments
using LightGraphs: edges, vertices, SimpleGraph, add_edge!, add_vertex!, Edge
using MetaGraphs: MetaGraph, MetaDiGraph, props, set_prop!

import LinearAlgebra: qr, nullspace, diag, Diagonal, tr, transpose
import Base: show
import Parameters: @unpack
import SumOfSquares.MultivariatePolynomials.polynomial
import SumOfSquares.SemialgebraicSets.inequalities

const PV = PolyVar
const APL = AbstractPolynomialLike

include("distributed.jl")
include("processes.jl")
include("symbolics.jl")
include("print_wrapper.jl")
include("utils.jl")
include("problem_setup.jl")
include("sos_programs_stationary.jl")
include("sos_programs_transient.jl")
include("sos_programs_control.jl")



end
