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songlab
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gnomad_balanced

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variant-effect-prediction

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test · 12M rows

chrom string	pos int64	ref string	alt string	label bool	consequence string
1	13,273	G	C	false	non_coding_transcript_exon
1	14,464	A	T	false	non_coding_transcript_exon
1	15,211	T	G	false	intron
1	16,257	G	C	false	intron
1	16,487	T	C	false	intron
1	16,571	G	A	false	intron
1	16,688	G	A	false	non_coding_transcript_exon
1	17,697	G	C	false	non_coding_transcript_exon
1	19,583	A	G	false	intron
1	20,083	G	C	true	intron
1	20,235	G	A	false	intron
1	28,990	G	C	true	intron
1	49,333	C	G	true	intergenic
1	49,554	A	G	false	intergenic
1	51,479	T	A	false	upstream_gene
1	51,803	T	C	false	upstream_gene
1	51,928	G	A	false	upstream_gene
1	52,058	G	C	false	upstream_gene
1	52,238	T	G	false	upstream_gene
1	54,366	A	G	false	intergenic
1	54,380	T	C	false	intergenic
1	54,421	A	G	false	intergenic
1	54,490	G	A	false	intergenic
1	54,586	T	C	false	intergenic
1	54,676	C	T	false	intergenic
1	54,844	G	A	false	intergenic
1	54,915	A	G	true	intergenic
1	55,164	C	A	false	intergenic
1	55,545	C	T	false	intergenic
1	55,926	T	C	false	intergenic
1	56,323	T	C	true	intergenic
1	56,406	A	G	true	intergenic
1	56,947	A	T	true	upstream_gene
1	57,083	T	G	true	upstream_gene
1	57,378	C	G	true	upstream_gene
1	57,856	T	A	false	intron
1	58,766	G	T	true	non_coding_transcript_exon
1	58,771	T	C	false	non_coding_transcript_exon
1	58,866	C	G	false	intron
1	58,989	C	G	false	intron
1	59,040	T	C	false	intron
1	59,615	C	T	false	intron
1	60,300	G	T	true	intron
1	60,332	T	C	false	intron
1	60,351	A	G	false	intron
1	61,098	G	C	true	intron
1	61,099	T	C	false	intron
1	61,462	T	A	false	intron
1	61,930	C	T	true	intron
1	61,980	G	A	true	intron
1	61,987	A	G	false	intron
1	62,203	T	C	false	intron
1	62,233	C	T	true	intron
1	62,271	A	G	false	intron
1	62,280	A	G	true	intron
1	62,678	C	T	true	intron
1	62,738	T	C	false	intron
1	63,268	T	C	false	non_coding_transcript_exon
1	63,378	T	C	true	non_coding_transcript_exon
1	63,516	A	G	false	non_coding_transcript_exon
1	63,527	T	C	false	non_coding_transcript_exon
1	63,550	C	A	true	non_coding_transcript_exon
1	63,671	G	A	false	non_coding_transcript_exon
1	63,697	T	C	false	non_coding_transcript_exon
1	64,025	T	C	false	non_coding_transcript_exon
1	64,310	A	G	false	downstream_gene
1	64,764	C	T	false	upstream_gene
1	64,931	G	A	false	upstream_gene
1	64,996	C	T	true	upstream_gene
1	66,093	G	C	true	intron
1	66,176	T	A	false	intron
1	66,219	A	T	false	intron
1	66,331	A	C	false	intron
1	66,381	T	A	false	intron
1	66,457	T	A	false	intron
1	66,507	T	A	false	intron
1	66,861	C	T	false	intron
1	66,876	T	G	false	intron
1	67,181	A	G	false	intron
1	67,236	A	G	true	intron
1	68,179	A	T	false	intron
1	69,511	A	G	false	missense
1	72,106	T	C	false	downstream_gene
1	72,617	G	T	true	intergenic
1	72,732	A	G	true	intergenic
1	73,649	C	G	false	intergenic
1	73,796	A	G	true	intergenic
1	75,767	G	A	false	intergenic
1	76,057	A	G	false	intergenic
1	76,206	T	C	false	intergenic
1	76,240	A	G	false	intergenic
1	76,838	T	G	false	intergenic
1	76,854	A	G	false	intergenic
1	76,875	C	A	true	intergenic
1	77,089	C	T	false	intergenic
1	77,475	A	G	true	intergenic
1	77,866	C	T	false	intergenic
1	77,961	G	A	false	intergenic
1	79,054	C	G	true	intergenic
1	79,311	A	T	true	intergenic

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gnomAD variants

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GPN-Star

paper: https://www.biorxiv.org/content/10.1101/2025.09.21.677619v1 code: https://github.com/songlab-cal/gpn • 30 items • Updated Dec 7, 2025 • 7