def bed(args):
    from jcvi.formats.bed import sort

    p = OptionParser(bed.__doc__)
    p.add_option("--blockonly", default=False, action="store_true",
                 help="Only print out large blocks, not fragments [default: %default]")
    p.add_option("--point", default=False, action="store_true",
                 help="Print accesssion as single point instead of interval")
    p.add_option("--scale", type="float",
                 help="Scale the OM distance by factor")
    p.add_option("--switch", default=False, action="store_true",
                 help="Switch reference and aligned map elements [default: %default]")
    p.add_option("--nosort", default=False, action="store_true",
                 help="Do not sort bed [default: %default]")
    opts, args = p.parse_args(args)

    if len(args) != 1:
        sys.exit(not p.print_help())

    xmlfile, = args
    bedfile = xmlfile.rsplit(".", 1)[0] + ".bed"

    om = OpticalMap(xmlfile)
    om.write_bed(bedfile, point=opts.point, scale=opts.scale,
                          blockonly=opts.blockonly, switch=opts.switch)

    if not opts.nosort:
        sort([bedfile, "--inplace"])
Utility to make testing update_blogs management command easier
dataset/ETHPy150Open tanghaibao/jcvi/assembly/opticalmap.py/bed--crossover with--dataset/ETHPy150Open python/pythondotorg/blogs/parser.py/_render_blog_supernav