def finalize(self, alternate_lsq6_average=None):
        self.addNativeToStandardFromInitModel()
        self.resampleInputFilesAndSetLastBasevol()
        self.createAverage(alternate_lsq6_average)
Within one call, take care of the potential initial model transformation,
dataset/ETHPy150Open Mouse-Imaging-Centre/pydpiper/atoms_and_modules/LSQ6.py/LSQ6Base.finalize