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The dataset generation failed because of a cast error
Error code: DatasetGenerationCastError Exception: DatasetGenerationCastError Message: An error occurred while generating the dataset All the data files must have the same columns, but at some point there are 1 new columns ({'ChenSmallRNA'}) and 1 missing columns ({'{'}). This happened while the csv dataset builder was generating data using zip://ChenSmallRNA-1728890830910170/input/description.txt::hf://datasets/blenderwang/tailor_dataset@1e3bd19e26ac74a9e68102f4d4bf52cb399d378a/ChenSmallRNA-1728890830910170.zip Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations) Traceback: Traceback (most recent call last): File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1870, in _prepare_split_single writer.write_table(table) File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/arrow_writer.py", line 622, in write_table pa_table = table_cast(pa_table, self._schema) File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2292, in table_cast return cast_table_to_schema(table, schema) File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2240, in cast_table_to_schema raise CastError( datasets.table.CastError: Couldn't cast ChenSmallRNA: null -- schema metadata -- pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 381 to {'{': Value(dtype='string', id=None)} because column names don't match During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1412, in compute_config_parquet_and_info_response parquet_operations, partial, estimated_dataset_info = stream_convert_to_parquet( File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 988, in stream_convert_to_parquet builder._prepare_split( File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1741, in _prepare_split for job_id, done, content in self._prepare_split_single( File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1872, in _prepare_split_single raise DatasetGenerationCastError.from_cast_error( datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset All the data files must have the same columns, but at some point there are 1 new columns ({'ChenSmallRNA'}) and 1 missing columns ({'{'}). This happened while the csv dataset builder was generating data using zip://ChenSmallRNA-1728890830910170/input/description.txt::hf://datasets/blenderwang/tailor_dataset@1e3bd19e26ac74a9e68102f4d4bf52cb399d378a/ChenSmallRNA-1728890830910170.zip Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
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{
string |
---|
"id": 1728890830910170, |
"name": "ChenSmallRNA", |
"desc": "ChenSmallRNA", |
"inputs": [ |
"ChenSmallRNA/D4.fq", |
"ChenSmallRNA/IN.fq", |
"ChenSmallRNA/MN.fq", |
"ChenSmallRNA/D2.fq", |
"ChenSmallRNA/ES.fq", |
"ChenSmallRNA/D3.fq" |
], |
"time": "2024-10-14 07:27:10" |
} |
"name": "ChenSmallRNA", |
"desc": "ChenSmallRNA", |
"inputs": [ |
"ChenSmallRNA/D4.fq", |
"ChenSmallRNA/IN.fq", |
"ChenSmallRNA/MN.fq", |
"ChenSmallRNA/D2.fq", |
"ChenSmallRNA/ES.fq", |
"ChenSmallRNA/D3.fq" |
], |
"species": "mmu", |
"genome": "mmu/ref/mouse.fa", |
"index_tables": "mmu/table/mouse_index", |
"annotation_files": [ |
"mmu/anno/mmu.gff3", |
"mmu/anno/gencode.vM35.tRNAs.gtf" |
], |
"analyze_list": [ |
"miRNA", |
"tRF" |
], |
"helper_files": [ |
"mmu/mmu.tsv", |
"mmu/mouse_tRFs.tsv" |
], |
"aligner_configs": { |
"backtracking_threshold": 16, |
"threads": 6, |
"max_multi_hits": 100, |
"output_sam": true, |
"mismatch": true, |
"t2c": false, |
"rescue": false |
}, |
"other_configs": { |
"normalization_method": "Quantile", |
"pseudo_count": 0.0001 |
}, |
"priority_list": [ |
"miRNA", |
"tRF", |
"piRNA", |
"rRNA", |
"protein_coding" |
] |
} |
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