name: BiobaseTrainingData version: author: Christian Hoener zu Siederdissen maintainer: homepage: copyright: Christian Hoener zu Siederdissen, 2011 category: Bioinformatics synopsis: RNA folding training data license: GPL-3 license-file: LICENSE build-type: Simple stability: experimental cabal-version: >= 1.6.0 description: Parameter training for RNA secondary structure prediction tools requires data to train on. Since there are a number of different available formats, and handling them all in the training tools is a pain, we have this library and programs. "MkTrainingData" transforms different formats and they all produce a common "training data" format. This format is Haskell-readable (and only partially human-readable) line-by-line. Generating additional training data is therefor easy as one can just "cat" together different training files. . Note that several features are designed around /extended/ RNA secondary structures. . Now with some filtering and manipulation options. library build-depends: base >3 && <5, bytestring, either-unwrap, iteratee, vector, BiobaseDotP, BiobaseFR3D, BiobaseXNA >= exposed-modules: Biobase.TrainingData Biobase.TrainingData.Filter Biobase.TrainingData.Import Biobase.TrainingData.Manip ghc-options: -O2 executable MkTrainingData build-depends: cmdargs == 0.8.* main-is: MkTrainingData.hs ghc-options: -O2