public CholeskyDecomposition(Matrix Arg){
  double[][] A=Arg.getArray();
  n=Arg.getRowDimension();
  L=new double[n][n];
  isspd=(Arg.getColumnDimension() == n);
  for (int j=0; j < n; j++) {
    double[] Lrowj=L[j];
    double d=0.0;
    for (int k=0; k < j; k++) {
      double[] Lrowk=L[k];
      double s=0.0;
      for (int i=0; i < k; i++) {
        s+=Lrowk[i] * Lrowj[i];
      }
      Lrowj[k]=s=(A[j][k] - s) / L[k][k];
      d=d + s * s;
      isspd=isspd & (A[k][j] == A[j][k]);
    }
    d=A[j][j] - d;
    isspd=isspd & (d > 0.0);
    L[j][j]=Math.sqrt(Math.max(d,0.0));
    for (int k=j + 1; k < n; k++) {
      L[j][k]=0.0;
    }
  }
}

public CholeskyDecomposition ( Matrix Arg ) { double [ ] [ ] A = Arg . getArray ( ) ; n = Arg . getRowDimension ( ) ; L = new double [ n ] [ n ] ; isspd = ( Arg . getColumnDimension ( ) == n ) ; for ( int j = 0 ; j < n ; j ++ ) { double [ ] Lrowj = L [ j ] ; double d = 0.0 ; for ( int k = 0 ; k < j ; k ++ ) { double [ ] Lrowk = L [ k ] ; double s = 0.0 ; for ( int i = 0 ; i < k ; i ++ ) { s += Lrowk [ i ] * Lrowj [ i ] ; } Lrowj [ k ] = s = ( A [ j ] [ k ] - s ) / L [ k ] [ k ] ; d = d + s * s ; isspd = isspd & ( A [ k ] [ j ] == A [ j ] [ k ] ) ; } d = A [ j ] [ j ] - d ; isspd = isspd & ( d > 0.0 ) ; L [ j ] [ j ] = Math . sqrt ( Math . max ( d , 0.0 ) ) ; for ( int k = j + 1 ; k < n ; k ++ ) { L [ j ] [ k ] = 0.0 ; } } }
cholesky algorithm for symmetric and positive definite matrix .
