full_anno_dataset_v0.1/README.md

metadata

configs:
  - config_name: default
    data_files:
      - split: demo
        path: demo.tsv
      - split: detection
        path: disease_detection.json
      - split: segmentation
        path: '*segmentation*'
      - split: report_generation
        path: '*report*'

Dataset Description

Our OmniFM-Dr full_anno_dataset introduces a full-annotated chest x-ray dataset, which contains disease localization, segmentation (heart and lung), and report for 3038 images.

Dataset Structure

• disease_detection.json:
  • 'disease_detection.json' is organized in COCO format and contains bounding boxes for 15 diseases (Cardiomegaly, Pneumonia, Abnormal Aortic Knob, Nodule, Atelectasis, Edema, Pleural Effusion, Pneumothorax, Emphysema, Fibrosis, Pleural Thickening, Tuberculosis, Fracture, Hilar Enlargement, and Consolidation).
• report.json:
  • 'report.json' is organized as {image_id: image_report}.
  • demo: "0003": "The texture of both lungs increased slightly." matches with '0003.jpg'.
• segment_heart_lung.json:
  • 'segment_heart_lung.json' is organized as {image_id: {"heart": [x1,y1,x2,y2,...], "right lung": [x1,y1,x2,y2,...], "left lung": [x1,y1,x2,y2,...], "width, height": [w, h]}}.
  • demo: "0003": { "heart": [ 954, 1112, 994, 1035, 1043, 987, 1087, 971, 1136, 971, 1184, 979, 1221, 987, 1253, 987, 1286, 1035, 1326, 1120, 1366, 1229, 1387, 1319, 1403, 1403, 1403, 1501, 1366, 1569, 1302, 1594, 1245, 1594, 1192, 1594, 1136, 1586, 1087, 1577, 1035, 1561, 970, 1533, 922, 1468, 905, 1387, 905, 1302, 922, 1213 ], "right lung": [ 404, 1861, 448, 1861, 485, 1723, 566, 1622, 655, 1553, 727, 1525, 909, 1513, 930, 1488, 934, 1375, 926, 1213, 990, 1051, 1006, 890, 1051, 764, 1079, 619, 1079, 465, 1051, 396, 1019, 368, 982, 360, 966, 356, 958, 356, 954, 356, 954, 356, 950, 356, 837, 364, 727, 404, 566, 546, 489, 671, 448, 801, 404, 1213, 355, 1537 ], "left lung": [ 1213, 396, 1205, 404, 1201, 404, 1197, 404, 1192, 404, 1192, 408, 1188, 566, 1213, 635, 1245, 691, 1213, 833, 1221, 958, 1286, 1084, 1334, 1185, 1374, 1375, 1383, 1537, 1387, 1577, 1480, 1606, 1561, 1630, 1629, 1671, 1698, 1743, 1718, 1844, 1751, 1844, 1787, 1715, 1795, 1594, 1779, 1375, 1779, 962, 1747, 728, 1698, 566, 1589, 449, 1472, 380 ], "width, height": [2020, 2021] }, matches with '0003.jpg'.