<filename>workflow/scripts/benchmarking/aggregate-test-case-variants.py
import sys

sys.stderr = open(snakemake.log[0], "w")

import pandas as pd

all_variants = []
for path in snakemake.input:
    all_variants.append(pd.read_csv(path, sep="\t"))

pd.concat(all_variants).to_csv(snakemake.output[0], index=False, sep="\t")

<filename>workflow/scripts/benchmarking/aggregate-test-case-variants.py
import sys

sys.stderr = open(snakemake.log[0], "w")

import pandas as pd

all_variants = []
for path in snakemake.input:
    all_variants.append(pd.read_csv(path, sep="\t"))

pd.concat(all_variants).to_csv(snakemake.output[0], index=False, sep="\t")
