have_PIL = True
try:
    import PIL.Image
    import pydicom
except ImportError:
    have_PIL = False

have_numpy = True
try:
    import numpy as np
except ImportError:
    have_numpy = False

from PyQt5.QtGui import QPixmap,QImage
from PIL.ImageQt import ImageQt


def get_LUT_value(data, window, level):
    """Apply the RGB Look-Up Table for the given data and window/level value."""
    if not have_numpy:
        raise ImportError("Numpy is not available. See http://numpy.scipy.org/"
                            " to download and install")

    return np.piecewise(data,
                        [data <= (level - 0.5 - (window - 1) / 2),
                        data > (level - 0.5 + (window - 1) / 2)],
                        [0, 255, lambda data: ((data - (level - 0.5)) \
                        / (window - 1) + 0.5) * (255 - 0)])


def get_PIL_image(dataset):
    """Get Image object from Python Imaging Library(PIL)"""
    if not have_PIL:
        raise ImportError("Python Imaging Library is not available. "
                        "See http://www.pythonware.com/products/pil/ "
                        "to download and install")

    if ('PixelData' not in dataset):
        raise TypeError("Cannot show image -- DICOM dataset does not have "
                        "pixel data")
        # can only apply LUT if these window info exists
    if ('WindowWidth' not in dataset) or ('WindowCenter' not in dataset):
        bits = dataset.BitsAllocated
        samples = dataset.SamplesPerPixel
        if bits == 8 and samples == 1:
            mode = "L"
        elif bits == 8 and samples == 3:
            mode = "RGB"
        elif bits == 16:
            # not sure about this -- PIL source says is 'experimental'
            # and no documentation. Also, should bytes swap depending
            # on endian of file and system??
            mode = "I;16"
        else:
            raise TypeError("Don't know PIL mode for %d BitsAllocated "
                                "and %d SamplesPerPixel" % (bits, samples))

            # PIL size = (width, height)
        size = (dataset.Columns, dataset.Rows)

            # Recommended to specify all details
            # by http://www.pythonware.com/library/pil/handbook/image.htm
        im = PIL.Image.frombuffer(mode, size, dataset.PixelData,
                                    "raw", mode, 0, 1)

    else:
        image = get_LUT_value(dataset.pixel_array, dataset.WindowWidth,
                                dataset.WindowCenter)
            # Convert mode to L since LUT has only 256 values:
            #   http://www.pythonware.com/library/pil/handbook/image.htm
        im = PIL.Image.fromarray(image).convert('L')

    return im

 
    # Bubble Sort algorithm 
def sortSliceLocation(datasets):
    n = len(datasets)
    for i in range(n):
        for j in range(0,n-i-1):
            loc1 = float(pydicom.dcmread(datasets[j]).SliceLocation)
            loc2 = float(pydicom.dcmread(datasets[j+1]).SliceLocation)
            if loc1 > loc2:
                datasets[j],datasets[j+1] = datasets[j+1],datasets[j] # Swap if the element found is greater
     
    return datasets

have_PIL = True
try:
    import PIL.Image
    import pydicom
except ImportError:
    have_PIL = False

have_numpy = True
try:
    import numpy as np
except ImportError:
    have_numpy = False

from PyQt5.QtGui import QPixmap,QImage
from PIL.ImageQt import ImageQt


def get_LUT_value(data, window, level):
    """Apply the RGB Look-Up Table for the given data and window/level value."""
    if not have_numpy:
        raise ImportError("Numpy is not available. See http://numpy.scipy.org/"
                            " to download and install")

    return np.piecewise(data,
                        [data <= (level - 0.5 - (window - 1) / 2),
                        data > (level - 0.5 + (window - 1) / 2)],
                        [0, 255, lambda data: ((data - (level - 0.5)) \
                        / (window - 1) + 0.5) * (255 - 0)])


def get_PIL_image(dataset):
    """Get Image object from Python Imaging Library(PIL)"""
    if not have_PIL:
        raise ImportError("Python Imaging Library is not available. "
                        "See http://www.pythonware.com/products/pil/ "
                        "to download and install")

    if ('PixelData' not in dataset):
        raise TypeError("Cannot show image -- DICOM dataset does not have "
                        "pixel data")
        # can only apply LUT if these window info exists
    if ('WindowWidth' not in dataset) or ('WindowCenter' not in dataset):
        bits = dataset.BitsAllocated
        samples = dataset.SamplesPerPixel
        if bits == 8 and samples == 1:
            mode = "L"
        elif bits == 8 and samples == 3:
            mode = "RGB"
        elif bits == 16:
            # not sure about this -- PIL source says is 'experimental'
            # and no documentation. Also, should bytes swap depending
            # on endian of file and system??
            mode = "I;16"
        else:
            raise TypeError("Don't know PIL mode for %d BitsAllocated "
                                "and %d SamplesPerPixel" % (bits, samples))

            # PIL size = (width, height)
        size = (dataset.Columns, dataset.Rows)

            # Recommended to specify all details
            # by http://www.pythonware.com/library/pil/handbook/image.htm
        im = PIL.Image.frombuffer(mode, size, dataset.PixelData,
                                    "raw", mode, 0, 1)

    else:
        image = get_LUT_value(dataset.pixel_array, dataset.WindowWidth,
                                dataset.WindowCenter)
            # Convert mode to L since LUT has only 256 values:
            #   http://www.pythonware.com/library/pil/handbook/image.htm
        im = PIL.Image.fromarray(image).convert('L')

    return im

 
    # Bubble Sort algorithm 
def sortSliceLocation(datasets):
    n = len(datasets)
    for i in range(n):
        for j in range(0,n-i-1):
            loc1 = float(pydicom.dcmread(datasets[j]).SliceLocation)
            loc2 = float(pydicom.dcmread(datasets[j+1]).SliceLocation)
            if loc1 > loc2:
                datasets[j],datasets[j+1] = datasets[j+1],datasets[j] # Swap if the element found is greater
     
    return datasets

Apply the RGB Look-Up Table for the given data and window/level value. Get Image object from Python Imaging Library(PIL) # can only apply LUT if these window info exists # not sure about this -- PIL source says is 'experimental' # and no documentation. Also, should bytes swap depending # on endian of file and system?? # PIL size = (width, height) # Recommended to specify all details # by http://www.pythonware.com/library/pil/handbook/image.htm # Convert mode to L since LUT has only 256 values: #   http://www.pythonware.com/library/pil/handbook/image.htm # Bubble Sort algorithm # Swap if the element found is greater