<filename>snakemake/testing_conf.py
TIFF_DIR = '/mnt/disks/data/histopath_data/CAMELYON16/testing'
ANNOTATION_DIR = TIFF_DIR + '/lesion_annotations'
OUT_DIR = '/mnt/disks/data/histopath_data/pyvirchow-out/testing'
PATCH_AND_MASK_DIR= OUT_DIR + '/patch_and_mask'
PATCH_DF_DIR = OUT_DIR + '/patch_dataframe'



<filename>snakemake/testing_conf.py
TIFF_DIR = '/mnt/disks/data/histopath_data/CAMELYON16/testing'
ANNOTATION_DIR = TIFF_DIR + '/lesion_annotations'
OUT_DIR = '/mnt/disks/data/histopath_data/pyvirchow-out/testing'
PATCH_AND_MASK_DIR= OUT_DIR + '/patch_and_mask'
PATCH_DF_DIR = OUT_DIR + '/patch_dataframe'


