#!/usr/bin/env python3

import gzip
import sys

# Write a program that predicts if a protein is trans-membrane
# Trans-membrane proteins have the following properties
#	Signal peptide: https://en.wikipedia.org/wiki/Signal_peptide
#	Hydrophobic regions(s): https://en.wikipedia.org/wiki/Transmembrane_protein
#	No prolines (alpha helix) in the hydrophobic regions
# Hydrophobicity is measued via Kyte-Dolittle
#	https://en.wikipedia.org/wiki/Hydrophilicity_plot
# For our purposes:
#	Signal peptide is 8 aa long, KD > 2.5, first 30 aa
#	Hydrophobic region is 11 aa long, KD > 2.0, after 30 aa






"""
18w
Dtg
Krn
Lac
Mcr
PRY
Pxt
Pzl
QC
Ror
S1P
S2P
Spt
apn
bai
bdl
bou
bug
cue
drd
ft
grk
knk
ksh
m
nac
ort
rk
smo
thw
tsg
waw
zye
"""

#!/usr/bin/env python3

import gzip
import sys

# Write a program that predicts if a protein is trans-membrane
# Trans-membrane proteins have the following properties
#	Signal peptide: https://en.wikipedia.org/wiki/Signal_peptide
#	Hydrophobic regions(s): https://en.wikipedia.org/wiki/Transmembrane_protein
#	No prolines (alpha helix) in the hydrophobic regions
# Hydrophobicity is measued via Kyte-Dolittle
#	https://en.wikipedia.org/wiki/Hydrophilicity_plot
# For our purposes:
#	Signal peptide is 8 aa long, KD > 2.5, first 30 aa
#	Hydrophobic region is 11 aa long, KD > 2.0, after 30 aa






"""
18w
Dtg
Krn
Lac
Mcr
PRY
Pxt
Pzl
QC
Ror
S1P
S2P
Spt
apn
bai
bdl
bou
bug
cue
drd
ft
grk
knk
ksh
m
nac
ort
rk
smo
thw
tsg
waw
zye
"""

#!/usr/bin/env python3 # Write a program that predicts if a protein is trans-membrane # Trans-membrane proteins have the following properties #	Signal peptide: https://en.wikipedia.org/wiki/Signal_peptide #	Hydrophobic regions(s): https://en.wikipedia.org/wiki/Transmembrane_protein #	No prolines (alpha helix) in the hydrophobic regions # Hydrophobicity is measued via Kyte-Dolittle #	https://en.wikipedia.org/wiki/Hydrophilicity_plot # For our purposes: #	Signal peptide is 8 aa long, KD > 2.5, first 30 aa #	Hydrophobic region is 11 aa long, KD > 2.0, after 30 aa 18w Dtg Krn Lac Mcr PRY Pxt Pzl QC Ror S1P S2P Spt apn bai bdl bou bug cue drd ft grk knk ksh m nac ort rk smo thw tsg waw zye