from loqusdb.plugins import MongoAdapter

class TestInsertVariant:
    
    def test_insert_one_variant(self, mongo_adapter, simplest_variant):
        """Test to insert one variant"""
        
        mongo_adapter.add_variant(simplest_variant)
        
        db = mongo_adapter.db
        
        #Get the variant without the adapter
        mongo_variant = db.variant.find_one()
        
        assert mongo_variant['_id'] == 'test'
        assert mongo_variant['observations'] == 1
        assert mongo_variant['homozygote'] == 0
    
    def test_insert_one_variant_twice(self, mongo_adapter, simplest_variant):
        """Test to insert one variant"""
    
        mongo_adapter.add_variant(simplest_variant)
        mongo_adapter.add_variant(simplest_variant)
        
        db = mongo_adapter.db

        mongo_variant = db.variant.find_one()

        assert mongo_variant['_id'] == 'test'
        assert mongo_variant['observations'] == 2
        assert mongo_variant.get('homozygote',0) == 0
    
    def test_insert_hom_variant(self, mongo_adapter, homozygous_variant):
        """Test to insert a homozygote variant"""
        
        mongo_adapter.add_variant(homozygous_variant)

        db = mongo_adapter.db
    
        mongo_variant = db.variant.find_one()
        assert mongo_variant['_id'] == 'test'
        assert mongo_variant['observations'] == 1
        assert mongo_variant.get('homozygote', 0) == 1
        assert mongo_variant['families'] == ['1']

    def test_insert_many(self, mongo_adapter, simplest_variant):
        """Test to insert a homozygote variant"""
        
        for i in range(10000):
            mongo_adapter.add_variant(simplest_variant)

        db = mongo_adapter.db
    
        mongo_variant = db.variant.find_one()
        assert mongo_variant['_id'] == 'test'
        assert mongo_variant['observations'] == 10000
        assert mongo_variant.get('homozygote', 0) == 0


class TestGetVariant:
    def test_get_variant(self, mongo_client, mongo_adapter, simplest_variant):
        """Test to insert one variant"""
        
        #Insert without adapter
        db = mongo_client['test']
        db.variant.insert(simplest_variant)
        
        mongo_variant = mongo_adapter.get_variant(simplest_variant)
        assert mongo_variant['_id'] == 'test'
    
    def test_get_none(self, mongo_adapter, simplest_variant):
        """Test to get non existing variant"""
    
        mongo_variant = mongo_adapter.get_variant(simplest_variant)
    
        assert mongo_variant == None
        
#These tests does not work with mongomock yet so we skip them for now
# class TestBulkOperations:
#
#     def test_insert_one_variant(self, real_mongo_client, simplest_variant):
#         """Test to insert one variant with bulk insert"""
#
#         adapter = MongoAdapter()
#         adapter.connect(database='test', client=real_mongo_client)
#
#         variants = [simplest_variant]
#
#         adapter.add_bulk(variants)
#         db = adapter.db
#         mongo_variant = db.variant.find_one()
#
#         assert mongo_variant['_id'] == 'test'
#         assert mongo_variant['observations'] == 1
#         assert mongo_variant['homozygote'] == 0
#
#     def test_insert_two_variants(self, real_mongo_client):
#         """Test to insert two variants with bulk"""
#
#         adapter = MongoAdapter()
#         adapter.connect(database='test', client=real_mongo_client)
#         db = adapter.db
#
#         variants = []
#         variants.append({
#             '_id': 'test',
#             'homozygote': 0
#         })
#         variants.append({
#             '_id': 'test_1',
#             'homozygote': 1
#         })
#
#
#         adapter.add_bulk(variants)
#
#         first_variant = db.variant.find_one({'_id': 'test'})
#         second_variant = db.variant.find_one({'_id': 'test_1'})
#
#         assert first_variant['_id'] == 'test'
#         assert first_variant['observations'] == 1
#         assert first_variant.get('homozygote',0) == 0
#
#         assert second_variant['_id'] == 'test_1'
#         assert second_variant['observations'] == 1
#         assert second_variant.get('homozygote',0) == 1
#
#
#     def test_insert_many(self, real_mongo_client):
#
#         adapter = MongoAdapter()
#         adapter.connect(database='test', client=real_mongo_client)
#         db = adapter.db
#
#         variants = ({'_id': 'test','homozygote': 0} for i in range(10000))
#
#         adapter.add_bulk(variants)
#
#         mongo_variant = db.variant.find_one()
#
#         assert mongo_variant['_id'] == 'test'
#         assert mongo_variant['observations'] == 10000
#         assert mongo_variant.get('homozygote', 0) == 0

class TestRemoveVariant:
    
    def test_remove_one_variant(self, mongo_adapter):
        """Test to update one variant"""
    
        db = mongo_adapter.db
    
        variant = {
            '_id': 'test',
            'observations': 1
        }
    
        db.variant.insert(variant)
    
        mongo_adapter.delete_variant(variant)

        assert db.variant.find_one() == None
    
    def test_downcount_one_variant(self, mongo_adapter):
        """Test to update one variant"""
    
        db = mongo_adapter.db
    
        insert_variant = {
            '_id': 'test',
            'families':['1', '2'],
            'observations': 2
        }
    
        db.variant.insert(insert_variant)

        variant = {
            '_id': 'test',
            'family_id':'1'
        }
        
        mongo_adapter.delete_variant(variant)
    
        mongo_variant = db.variant.find_one()

        assert mongo_variant['observations'] == 1
        assert mongo_variant['families'] == ['2']
    
    def test_remove_non_existing(self, mongo_adapter, simplest_variant):
    
        db = mongo_adapter.db
    
        mongo_adapter.delete_variant(simplest_variant)

        assert db.variant.find_one() == None
    

from loqusdb.plugins import MongoAdapter

class TestInsertVariant:
    
    def test_insert_one_variant(self, mongo_adapter, simplest_variant):
        """Test to insert one variant"""
        
        mongo_adapter.add_variant(simplest_variant)
        
        db = mongo_adapter.db
        
        #Get the variant without the adapter
        mongo_variant = db.variant.find_one()
        
        assert mongo_variant['_id'] == 'test'
        assert mongo_variant['observations'] == 1
        assert mongo_variant['homozygote'] == 0
    
    def test_insert_one_variant_twice(self, mongo_adapter, simplest_variant):
        """Test to insert one variant"""
    
        mongo_adapter.add_variant(simplest_variant)
        mongo_adapter.add_variant(simplest_variant)
        
        db = mongo_adapter.db

        mongo_variant = db.variant.find_one()

        assert mongo_variant['_id'] == 'test'
        assert mongo_variant['observations'] == 2
        assert mongo_variant.get('homozygote',0) == 0
    
    def test_insert_hom_variant(self, mongo_adapter, homozygous_variant):
        """Test to insert a homozygote variant"""
        
        mongo_adapter.add_variant(homozygous_variant)

        db = mongo_adapter.db
    
        mongo_variant = db.variant.find_one()
        assert mongo_variant['_id'] == 'test'
        assert mongo_variant['observations'] == 1
        assert mongo_variant.get('homozygote', 0) == 1
        assert mongo_variant['families'] == ['1']

    def test_insert_many(self, mongo_adapter, simplest_variant):
        """Test to insert a homozygote variant"""
        
        for i in range(10000):
            mongo_adapter.add_variant(simplest_variant)

        db = mongo_adapter.db
    
        mongo_variant = db.variant.find_one()
        assert mongo_variant['_id'] == 'test'
        assert mongo_variant['observations'] == 10000
        assert mongo_variant.get('homozygote', 0) == 0


class TestGetVariant:
    def test_get_variant(self, mongo_client, mongo_adapter, simplest_variant):
        """Test to insert one variant"""
        
        #Insert without adapter
        db = mongo_client['test']
        db.variant.insert(simplest_variant)
        
        mongo_variant = mongo_adapter.get_variant(simplest_variant)
        assert mongo_variant['_id'] == 'test'
    
    def test_get_none(self, mongo_adapter, simplest_variant):
        """Test to get non existing variant"""
    
        mongo_variant = mongo_adapter.get_variant(simplest_variant)
    
        assert mongo_variant == None
        
#These tests does not work with mongomock yet so we skip them for now
# class TestBulkOperations:
#
#     def test_insert_one_variant(self, real_mongo_client, simplest_variant):
#         """Test to insert one variant with bulk insert"""
#
#         adapter = MongoAdapter()
#         adapter.connect(database='test', client=real_mongo_client)
#
#         variants = [simplest_variant]
#
#         adapter.add_bulk(variants)
#         db = adapter.db
#         mongo_variant = db.variant.find_one()
#
#         assert mongo_variant['_id'] == 'test'
#         assert mongo_variant['observations'] == 1
#         assert mongo_variant['homozygote'] == 0
#
#     def test_insert_two_variants(self, real_mongo_client):
#         """Test to insert two variants with bulk"""
#
#         adapter = MongoAdapter()
#         adapter.connect(database='test', client=real_mongo_client)
#         db = adapter.db
#
#         variants = []
#         variants.append({
#             '_id': 'test',
#             'homozygote': 0
#         })
#         variants.append({
#             '_id': 'test_1',
#             'homozygote': 1
#         })
#
#
#         adapter.add_bulk(variants)
#
#         first_variant = db.variant.find_one({'_id': 'test'})
#         second_variant = db.variant.find_one({'_id': 'test_1'})
#
#         assert first_variant['_id'] == 'test'
#         assert first_variant['observations'] == 1
#         assert first_variant.get('homozygote',0) == 0
#
#         assert second_variant['_id'] == 'test_1'
#         assert second_variant['observations'] == 1
#         assert second_variant.get('homozygote',0) == 1
#
#
#     def test_insert_many(self, real_mongo_client):
#
#         adapter = MongoAdapter()
#         adapter.connect(database='test', client=real_mongo_client)
#         db = adapter.db
#
#         variants = ({'_id': 'test','homozygote': 0} for i in range(10000))
#
#         adapter.add_bulk(variants)
#
#         mongo_variant = db.variant.find_one()
#
#         assert mongo_variant['_id'] == 'test'
#         assert mongo_variant['observations'] == 10000
#         assert mongo_variant.get('homozygote', 0) == 0

class TestRemoveVariant:
    
    def test_remove_one_variant(self, mongo_adapter):
        """Test to update one variant"""
    
        db = mongo_adapter.db
    
        variant = {
            '_id': 'test',
            'observations': 1
        }
    
        db.variant.insert(variant)
    
        mongo_adapter.delete_variant(variant)

        assert db.variant.find_one() == None
    
    def test_downcount_one_variant(self, mongo_adapter):
        """Test to update one variant"""
    
        db = mongo_adapter.db
    
        insert_variant = {
            '_id': 'test',
            'families':['1', '2'],
            'observations': 2
        }
    
        db.variant.insert(insert_variant)

        variant = {
            '_id': 'test',
            'family_id':'1'
        }
        
        mongo_adapter.delete_variant(variant)
    
        mongo_variant = db.variant.find_one()

        assert mongo_variant['observations'] == 1
        assert mongo_variant['families'] == ['2']
    
    def test_remove_non_existing(self, mongo_adapter, simplest_variant):
    
        db = mongo_adapter.db
    
        mongo_adapter.delete_variant(simplest_variant)

        assert db.variant.find_one() == None
    

Test to insert one variant #Get the variant without the adapter Test to insert one variant Test to insert a homozygote variant Test to insert a homozygote variant Test to insert one variant #Insert without adapter Test to get non existing variant #These tests does not work with mongomock yet so we skip them for now # class TestBulkOperations: # #     def test_insert_one_variant(self, real_mongo_client, simplest_variant): #         """Test to insert one variant with bulk insert""" # #         adapter = MongoAdapter() #         adapter.connect(database='test', client=real_mongo_client) # #         variants = [simplest_variant] # #         adapter.add_bulk(variants) #         db = adapter.db #         mongo_variant = db.variant.find_one() # #         assert mongo_variant['_id'] == 'test' #         assert mongo_variant['observations'] == 1 #         assert mongo_variant['homozygote'] == 0 # #     def test_insert_two_variants(self, real_mongo_client): #         """Test to insert two variants with bulk""" # #         adapter = MongoAdapter() #         adapter.connect(database='test', client=real_mongo_client) #         db = adapter.db # #         variants = [] #         variants.append({ #             '_id': 'test', #             'homozygote': 0 #         }) #         variants.append({ #             '_id': 'test_1', #             'homozygote': 1 #         }) # # #         adapter.add_bulk(variants) # #         first_variant = db.variant.find_one({'_id': 'test'}) #         second_variant = db.variant.find_one({'_id': 'test_1'}) # #         assert first_variant['_id'] == 'test' #         assert first_variant['observations'] == 1 #         assert first_variant.get('homozygote',0) == 0 # #         assert second_variant['_id'] == 'test_1' #         assert second_variant['observations'] == 1 #         assert second_variant.get('homozygote',0) == 1 # # #     def test_insert_many(self, real_mongo_client): # #         adapter = MongoAdapter() #         adapter.connect(database='test', client=real_mongo_client) #         db = adapter.db # #         variants = ({'_id': 'test','homozygote': 0} for i in range(10000)) # #         adapter.add_bulk(variants) # #         mongo_variant = db.variant.find_one() # #         assert mongo_variant['_id'] == 'test' #         assert mongo_variant['observations'] == 10000 #         assert mongo_variant.get('homozygote', 0) == 0 Test to update one variant Test to update one variant