
RAWDATA_DIR = '/staging/as/skchoudh/re-ribo-datasets/gallus_gallus/SRP016501'
OUT_DIR = '/staging/as/skchoudh/rna-seq-output/gallus_gallus/SRP016501'
CDNA_FA_GZ = '/home/cmb-panasas2/skchoudh/genomes/gallus_gallus/cdna/Gallus_gallus.Gallus_gallus-5.0.cdna.all.fa.gz'    
CDNA_IDX = '/home/cmb-panasas2/skchoudh/genomes/gallus_gallus/cdna/Gallus_gallus.Gallus_gallus-5.0.cdna.all.kallisto.index'    


RAWDATA_DIR = '/staging/as/skchoudh/re-ribo-datasets/gallus_gallus/SRP016501'
OUT_DIR = '/staging/as/skchoudh/rna-seq-output/gallus_gallus/SRP016501'
CDNA_FA_GZ = '/home/cmb-panasas2/skchoudh/genomes/gallus_gallus/cdna/Gallus_gallus.Gallus_gallus-5.0.cdna.all.fa.gz'    
CDNA_IDX = '/home/cmb-panasas2/skchoudh/genomes/gallus_gallus/cdna/Gallus_gallus.Gallus_gallus-5.0.cdna.all.kallisto.index'    
