<reponame>int-brain-lab/ibllib<filename>examples/one/ephys/plot_raster_drift.py
"""
Compute drift for example sessions using:
https://github.com/int-brain-lab/ibllib/blob/master/brainbox/metrics/electrode_drift.py
and display raster plot below
"""
# Authors: Gaelle, Olivier

from brainbox.metrics.electrode_drift import estimate_drift
from one.api import ONE
import brainbox.plot as bbplot
import matplotlib.pyplot as plt

one = ONE()

# Find sessions
dsets = ['spikes.times.npy',
         'spikes.amps.npy',
         'spikes.depths.npy']

# eids = one.search(dataset=dsets,
#                   project='ibl_neuropixel_brainwide_01',
#                   task_protocol='_iblrig_tasks_ephysChoiceWorld')
#
# eid = eids[0]  # Test with little drift: '7cdb71fb-928d-4eea-988f-0b655081f21c'

eid = '89f0d6ff-69f4-45bc-b89e-72868abb042a'  # Test with huge drift

# Get dataset

spikes = one.load_object(eid, 'spikes', collection='alf/probe00')

drift = estimate_drift(spikes.times, spikes.amps, spikes.depths, display=False)

# PLOT
# Tight layout
fig3 = plt.figure(constrained_layout=True)
gs = fig3.add_gridspec(3, 3)
f3_ax0 = fig3.add_subplot(gs[0, :])
f3_ax0.plot(drift)
f3_ax1 = fig3.add_subplot(gs[1:, :])
bbplot.driftmap(spikes.times,
                spikes.depths,
                ax=f3_ax1, plot_style='bincount')
f3_ax0.set_xlim(f3_ax1.get_xlim())

"""
Compute drift for example sessions using:
https://github.com/int-brain-lab/ibllib/blob/master/brainbox/metrics/electrode_drift.py
and display raster plot below
"""
# Authors: Gaelle, Olivier

from brainbox.metrics.electrode_drift import estimate_drift
from one.api import ONE
import brainbox.plot as bbplot
import matplotlib.pyplot as plt

one = ONE()

# Find sessions
dsets = ['spikes.times.npy',
         'spikes.amps.npy',
         'spikes.depths.npy']

# eids = one.search(dataset=dsets,
#                   project='ibl_neuropixel_brainwide_01',
#                   task_protocol='_iblrig_tasks_ephysChoiceWorld')
#
# eid = eids[0]  # Test with little drift: '7cdb71fb-928d-4eea-988f-0b655081f21c'

eid = '89f0d6ff-69f4-45bc-b89e-72868abb042a'  # Test with huge drift

# Get dataset

spikes = one.load_object(eid, 'spikes', collection='alf/probe00')

drift = estimate_drift(spikes.times, spikes.amps, spikes.depths, display=False)

# PLOT
# Tight layout
fig3 = plt.figure(constrained_layout=True)
gs = fig3.add_gridspec(3, 3)
f3_ax0 = fig3.add_subplot(gs[0, :])
f3_ax0.plot(drift)
f3_ax1 = fig3.add_subplot(gs[1:, :])
bbplot.driftmap(spikes.times,
                spikes.depths,
                ax=f3_ax1, plot_style='bincount')
f3_ax0.set_xlim(f3_ax1.get_xlim())
Compute drift for example sessions using: https://github.com/int-brain-lab/ibllib/blob/master/brainbox/metrics/electrode_drift.py and display raster plot below # Authors: Gaelle, Olivier # Find sessions # eids = one.search(dataset=dsets, #                   project='ibl_neuropixel_brainwide_01', #                   task_protocol='_iblrig_tasks_ephysChoiceWorld') # # eid = eids[0]  # Test with little drift: '7cdb71fb-928d-4eea-988f-0b655081f21c' # Test with huge drift # Get dataset # PLOT # Tight layout