<reponame>JamesChooWK/plantcv
# Color mask(s) in any color

import os
import cv2
import numpy as np
from plantcv.plantcv import params
from plantcv.plantcv import print_image
from plantcv.plantcv import plot_image
from plantcv.plantcv import fatal_error


def colorize_masks(masks, colors):
    """Plot masks with different colors
    Inputs:
        masks    = list of masks to colorize
        colors   = list of colors (either keys from the color_dict or a list of custom tuples)

        :param masks: list
        :param colors: list
        :return colored_img: ndarray
        """

    # Users must enter the exact same number of colors as classes they'd like to color
    num_classes = len(masks)
    num_colors = len(colors)
    if not num_classes == num_colors:
        fatal_error("The number of colors provided doesn't match the number of class masks provided.")

    # Check to make sure user provided at least one mask and color
    if len(colors) == 0 or len(masks) == 0:
        fatal_error("At least one class mask and color must be provided.")

    # Dictionary of colors and the BGR values, based on some of the colors listed here:
    # https://en.wikipedia.org/wiki/X11_color_names
    color_dict = {'white': (255,255,255), 'black': (0,0,0), 'aqua': (0,255,255), 'blue': (255,0,0), 'blue violet':
    (228,44,138), 'brown': (41,41,168), 'chartreuse': (0,255,128), 'dark blue': (140,0,0), 'gray': (169,169,169),
    'yellow': (0, 255, 255), 'turquoise': (210,210,64), 'red': (0, 0, 255), 'purple': (241,33,161), 'orange red':
    (0,69, 255), 'orange': (0,166,255), 'lime': (0, 255, 0), 'lime green': (52,205,52), 'fuchsia': (255,0,255),
    'crimson': (61,20,220), 'beige': (197,220,246), 'chocolate': (31,105,210), 'coral': (79,128,255), 'dark green':
    (0,100,0), 'dark orange': (0,140,255), 'green yellow': (46,255,174), 'light blue': (230,218,174), 'tomato':
    (72,100,255), 'slate gray': (143,128,113), 'gold': (0,215,255), 'goldenrod': (33,166,218), 'light green':
    (143,238,143), 'sea green': (77,141,46), 'dark red': (0,0,141), 'pink': (204,192,255), 'dark yellow': (0,205,255),
    'green': (0,255,0)}

    ix, iy = np.shape(masks[0])
    colored_img = np.zeros((ix,iy,3), dtype=np.uint8)
    # Assign pixels to the selected color

    for i in range(0, len(masks)):
        mask = np.copy(masks[i])
        mask = cv2.cvtColor(mask, cv2.COLOR_GRAY2BGR)
        if isinstance(colors[i], tuple):
            mask[masks[i] > 0] = colors[i]
        elif isinstance(colors[i], str):
            mask[masks[i] > 0] = color_dict[colors[i]]
        else:
            fatal_error("All elements of the 'colors' list must be either str or tuple")
        colored_img = colored_img + mask


    if params.debug == 'print':
        print_image(colored_img, os.path.join(params.debug_outdir, str(params.device) + '_classes_plot.png'))
    elif params.debug == 'plot':
        plot_image(colored_img)

    return colored_img

# Color mask(s) in any color

import os
import cv2
import numpy as np
from plantcv.plantcv import params
from plantcv.plantcv import print_image
from plantcv.plantcv import plot_image
from plantcv.plantcv import fatal_error


def colorize_masks(masks, colors):
    """Plot masks with different colors
    Inputs:
        masks    = list of masks to colorize
        colors   = list of colors (either keys from the color_dict or a list of custom tuples)

        :param masks: list
        :param colors: list
        :return colored_img: ndarray
        """

    # Users must enter the exact same number of colors as classes they'd like to color
    num_classes = len(masks)
    num_colors = len(colors)
    if not num_classes == num_colors:
        fatal_error("The number of colors provided doesn't match the number of class masks provided.")

    # Check to make sure user provided at least one mask and color
    if len(colors) == 0 or len(masks) == 0:
        fatal_error("At least one class mask and color must be provided.")

    # Dictionary of colors and the BGR values, based on some of the colors listed here:
    # https://en.wikipedia.org/wiki/X11_color_names
    color_dict = {'white': (255,255,255), 'black': (0,0,0), 'aqua': (0,255,255), 'blue': (255,0,0), 'blue violet':
    (228,44,138), 'brown': (41,41,168), 'chartreuse': (0,255,128), 'dark blue': (140,0,0), 'gray': (169,169,169),
    'yellow': (0, 255, 255), 'turquoise': (210,210,64), 'red': (0, 0, 255), 'purple': (241,33,161), 'orange red':
    (0,69, 255), 'orange': (0,166,255), 'lime': (0, 255, 0), 'lime green': (52,205,52), 'fuchsia': (255,0,255),
    'crimson': (61,20,220), 'beige': (197,220,246), 'chocolate': (31,105,210), 'coral': (79,128,255), 'dark green':
    (0,100,0), 'dark orange': (0,140,255), 'green yellow': (46,255,174), 'light blue': (230,218,174), 'tomato':
    (72,100,255), 'slate gray': (143,128,113), 'gold': (0,215,255), 'goldenrod': (33,166,218), 'light green':
    (143,238,143), 'sea green': (77,141,46), 'dark red': (0,0,141), 'pink': (204,192,255), 'dark yellow': (0,205,255),
    'green': (0,255,0)}

    ix, iy = np.shape(masks[0])
    colored_img = np.zeros((ix,iy,3), dtype=np.uint8)
    # Assign pixels to the selected color

    for i in range(0, len(masks)):
        mask = np.copy(masks[i])
        mask = cv2.cvtColor(mask, cv2.COLOR_GRAY2BGR)
        if isinstance(colors[i], tuple):
            mask[masks[i] > 0] = colors[i]
        elif isinstance(colors[i], str):
            mask[masks[i] > 0] = color_dict[colors[i]]
        else:
            fatal_error("All elements of the 'colors' list must be either str or tuple")
        colored_img = colored_img + mask


    if params.debug == 'print':
        print_image(colored_img, os.path.join(params.debug_outdir, str(params.device) + '_classes_plot.png'))
    elif params.debug == 'plot':
        plot_image(colored_img)

    return colored_img
# Color mask(s) in any color Plot masks with different colors     Inputs:         masks    = list of masks to colorize         colors   = list of colors (either keys from the color_dict or a list of custom tuples)          :param masks: list         :param colors: list         :return colored_img: ndarray # Users must enter the exact same number of colors as classes they'd like to color # Check to make sure user provided at least one mask and color # Dictionary of colors and the BGR values, based on some of the colors listed here: # https://en.wikipedia.org/wiki/X11_color_names # Assign pixels to the selected color