#!/usr/bin/env python3
"""PyTest tests for the dacksify_pos_hmmer_hits.py module.
"""
import os
import sys
sys.path.append(os.path.join(os.path.dirname(sys.path[0]),'amoebaelib')) # Customize.

from dacksify_pos_hmmer_hits import \
get_rblast_string, \
find_relev_blast, \
get_acc_for_prot_name, \
get_rblast_list, \
is_redun_acc, \
find_unabbrev_name, \
get_red_acc_listx, \
query_retrieved, \
dacksify


def test_get_rblast_string():  # ***Incomplete test
    """Test the get_rblast_string function in the dacksify_pos_hmmer_hits.py file.
    """
    ##########################
    # Arrange.
    relev_blast_res = "relev_blast_res"
    red_acc_file = "red_acc_file"

    ##########################
    # Act.
    #x = get_rblast_string(relev_blast_res,
    #		red_acc_file)

    ##########################
    # Assert.
    assert True == True # ***Temporary.



def test_find_relev_blast():  # ***Incomplete test
    """Test the find_relev_blast function in the dacksify_pos_hmmer_hits.py file.
    """
    ##########################
    # Arrange.
    blast_res = "blast_res"
    red_acc_file = "red_acc_file"

    ##########################
    # Act.
    #x = find_relev_blast(blast_res,
    #		red_acc_file)

    ##########################
    # Assert.
    assert True == True # ***Temporary.



def test_get_acc_for_prot_name():  # ***Incomplete test
    """Test the get_acc_for_prot_name function in the dacksify_pos_hmmer_hits.py file.
    """
    ##########################
    # Arrange.
    prot_name = "prot_name"
    key_file = "key_file"

    ##########################
    # Act.
    #x = get_acc_for_prot_name(prot_name,
    #		key_file)

    ##########################
    # Assert.
    assert True == True # ***Temporary.



def test_get_rblast_list():  # ***Incomplete test
    """Test the get_rblast_list function in the dacksify_pos_hmmer_hits.py file.
    """
    ##########################
    # Arrange.
    linestring = "linestring"

    ##########################
    # Act.
    #x = get_rblast_list(linestring)

    ##########################
    # Assert.
    assert True == True # ***Temporary.



def test_is_redun_acc():  # ***Incomplete test
    """Test the is_redun_acc function in the dacksify_pos_hmmer_hits.py file.
    """
    ##########################
    # Arrange.
    redun_acc_file = "redun_acc_file"
    acc = "acc"

    ##########################
    # Act.
    #x = is_redun_acc(redun_acc_file,
    #		acc)

    ##########################
    # Assert.
    assert True == True # ***Temporary.



def test_find_unabbrev_name():  # ***Incomplete test
    """Test the find_unabbrev_name function in the dacksify_pos_hmmer_hits.py file.
    """
    ##########################
    # Arrange.
    abbrev = "abbrev"
    tablefilepath = "tablefilepath"

    ##########################
    # Act.
    #x = find_unabbrev_name(abbrev,
    #		tablefilepath)

    ##########################
    # Assert.
    assert True == True # ***Temporary.



def test_get_red_acc_listx():  # ***Incomplete test
    """Test the get_red_acc_listx function in the dacksify_pos_hmmer_hits.py file.
    """
    ##########################
    # Arrange.
    infilepath = "infilepath"

    ##########################
    # Act.
    #x = get_red_acc_listx(infilepath)

    ##########################
    # Assert.
    assert True == True # ***Temporary.



def test_query_retrieved():  # ***Incomplete test
    """Test the query_retrieved function in the dacksify_pos_hmmer_hits.py file.
    """
    ##########################
    # Arrange.
    hmmer_string = "hmmer_string"
    red_acc_file = "red_acc_file"

    ##########################
    # Act.
    #x = query_retrieved(hmmer_string,
    #		red_acc_file)

    ##########################
    # Assert.
    assert True == True # ***Temporary.



def test_dacksify():  # ***Incomplete test
    """Test the dacksify function in the dacksify_pos_hmmer_hits.py file.
    """
    ##########################
    # Arrange.
    infp = "infp"
    outfp = "outfp"
    tablefilepath = "tablefilepath"
    red_acc_file = "red_acc_file"
    evaldiffset = "evaldiffset"

    ##########################
    # Act.
    #x = dacksify(infp,
    #		outfp,
    #		tablefilepath,
    #		red_acc_file,
    #		evaldiffset)

    ##########################
    # Assert.
    assert True == True # ***Temporary.



#!/usr/bin/env python3
"""PyTest tests for the dacksify_pos_hmmer_hits.py module.
"""
import os
import sys
sys.path.append(os.path.join(os.path.dirname(sys.path[0]),'amoebaelib')) # Customize.

from dacksify_pos_hmmer_hits import \
get_rblast_string, \
find_relev_blast, \
get_acc_for_prot_name, \
get_rblast_list, \
is_redun_acc, \
find_unabbrev_name, \
get_red_acc_listx, \
query_retrieved, \
dacksify


def test_get_rblast_string():  # ***Incomplete test
    """Test the get_rblast_string function in the dacksify_pos_hmmer_hits.py file.
    """
    ##########################
    # Arrange.
    relev_blast_res = "relev_blast_res"
    red_acc_file = "red_acc_file"

    ##########################
    # Act.
    #x = get_rblast_string(relev_blast_res,
    #		red_acc_file)

    ##########################
    # Assert.
    assert True == True # ***Temporary.



def test_find_relev_blast():  # ***Incomplete test
    """Test the find_relev_blast function in the dacksify_pos_hmmer_hits.py file.
    """
    ##########################
    # Arrange.
    blast_res = "blast_res"
    red_acc_file = "red_acc_file"

    ##########################
    # Act.
    #x = find_relev_blast(blast_res,
    #		red_acc_file)

    ##########################
    # Assert.
    assert True == True # ***Temporary.



def test_get_acc_for_prot_name():  # ***Incomplete test
    """Test the get_acc_for_prot_name function in the dacksify_pos_hmmer_hits.py file.
    """
    ##########################
    # Arrange.
    prot_name = "prot_name"
    key_file = "key_file"

    ##########################
    # Act.
    #x = get_acc_for_prot_name(prot_name,
    #		key_file)

    ##########################
    # Assert.
    assert True == True # ***Temporary.



def test_get_rblast_list():  # ***Incomplete test
    """Test the get_rblast_list function in the dacksify_pos_hmmer_hits.py file.
    """
    ##########################
    # Arrange.
    linestring = "linestring"

    ##########################
    # Act.
    #x = get_rblast_list(linestring)

    ##########################
    # Assert.
    assert True == True # ***Temporary.



def test_is_redun_acc():  # ***Incomplete test
    """Test the is_redun_acc function in the dacksify_pos_hmmer_hits.py file.
    """
    ##########################
    # Arrange.
    redun_acc_file = "redun_acc_file"
    acc = "acc"

    ##########################
    # Act.
    #x = is_redun_acc(redun_acc_file,
    #		acc)

    ##########################
    # Assert.
    assert True == True # ***Temporary.



def test_find_unabbrev_name():  # ***Incomplete test
    """Test the find_unabbrev_name function in the dacksify_pos_hmmer_hits.py file.
    """
    ##########################
    # Arrange.
    abbrev = "abbrev"
    tablefilepath = "tablefilepath"

    ##########################
    # Act.
    #x = find_unabbrev_name(abbrev,
    #		tablefilepath)

    ##########################
    # Assert.
    assert True == True # ***Temporary.



def test_get_red_acc_listx():  # ***Incomplete test
    """Test the get_red_acc_listx function in the dacksify_pos_hmmer_hits.py file.
    """
    ##########################
    # Arrange.
    infilepath = "infilepath"

    ##########################
    # Act.
    #x = get_red_acc_listx(infilepath)

    ##########################
    # Assert.
    assert True == True # ***Temporary.



def test_query_retrieved():  # ***Incomplete test
    """Test the query_retrieved function in the dacksify_pos_hmmer_hits.py file.
    """
    ##########################
    # Arrange.
    hmmer_string = "hmmer_string"
    red_acc_file = "red_acc_file"

    ##########################
    # Act.
    #x = query_retrieved(hmmer_string,
    #		red_acc_file)

    ##########################
    # Assert.
    assert True == True # ***Temporary.



def test_dacksify():  # ***Incomplete test
    """Test the dacksify function in the dacksify_pos_hmmer_hits.py file.
    """
    ##########################
    # Arrange.
    infp = "infp"
    outfp = "outfp"
    tablefilepath = "tablefilepath"
    red_acc_file = "red_acc_file"
    evaldiffset = "evaldiffset"

    ##########################
    # Act.
    #x = dacksify(infp,
    #		outfp,
    #		tablefilepath,
    #		red_acc_file,
    #		evaldiffset)

    ##########################
    # Assert.
    assert True == True # ***Temporary.



#!/usr/bin/env python3 PyTest tests for the dacksify_pos_hmmer_hits.py module. # Customize. # ***Incomplete test Test the get_rblast_string function in the dacksify_pos_hmmer_hits.py file. ########################## # Arrange. ########################## # Act. #x = get_rblast_string(relev_blast_res, #		red_acc_file) ########################## # Assert. # ***Temporary. # ***Incomplete test Test the find_relev_blast function in the dacksify_pos_hmmer_hits.py file. ########################## # Arrange. ########################## # Act. #x = find_relev_blast(blast_res, #		red_acc_file) ########################## # Assert. # ***Temporary. # ***Incomplete test Test the get_acc_for_prot_name function in the dacksify_pos_hmmer_hits.py file. ########################## # Arrange. ########################## # Act. #x = get_acc_for_prot_name(prot_name, #		key_file) ########################## # Assert. # ***Temporary. # ***Incomplete test Test the get_rblast_list function in the dacksify_pos_hmmer_hits.py file. ########################## # Arrange. ########################## # Act. #x = get_rblast_list(linestring) ########################## # Assert. # ***Temporary. # ***Incomplete test Test the is_redun_acc function in the dacksify_pos_hmmer_hits.py file. ########################## # Arrange. ########################## # Act. #x = is_redun_acc(redun_acc_file, #		acc) ########################## # Assert. # ***Temporary. # ***Incomplete test Test the find_unabbrev_name function in the dacksify_pos_hmmer_hits.py file. ########################## # Arrange. ########################## # Act. #x = find_unabbrev_name(abbrev, #		tablefilepath) ########################## # Assert. # ***Temporary. # ***Incomplete test Test the get_red_acc_listx function in the dacksify_pos_hmmer_hits.py file. ########################## # Arrange. ########################## # Act. #x = get_red_acc_listx(infilepath) ########################## # Assert. # ***Temporary. # ***Incomplete test Test the query_retrieved function in the dacksify_pos_hmmer_hits.py file. ########################## # Arrange. ########################## # Act. #x = query_retrieved(hmmer_string, #		red_acc_file) ########################## # Assert. # ***Temporary. # ***Incomplete test Test the dacksify function in the dacksify_pos_hmmer_hits.py file. ########################## # Arrange. ########################## # Act. #x = dacksify(infp, #		outfp, #		tablefilepath, #		red_acc_file, #		evaldiffset) ########################## # Assert. # ***Temporary.