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--- |
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license: cc-by-nc-4.0 |
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tags: |
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- biology |
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- protein |
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- antibody |
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- VHH |
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--- |
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## AVIDa-SARS-CoV-2 |
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AVIDa-SARS-CoV-2 is a dataset featuring the antigen-variable domain of heavy chain of heavy chain antibody (VHH) interactions obtained from two alpacas immunized with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) spike proteins. |
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AVIDa-SARS-CoV-2 includes binary labels indicating the binding or non-binding of diverse VHH sequences to 12 SARS-CoV-2 mutants, such as the Delta and Omicron variants. |
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Further details on AVIDa-SARS-CoV-2 are described in our paper "A SARS-CoV-2 Interaction Dataset and VHH Sequence Corpus for Antibody Language Models.” |
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## Columns |
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**AVIDa-SARS-CoV-2.csv / train.csv / test.csv** |
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| Column | Description | |
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| --------------- | --------------------------------------------------------------------------------- | |
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| VHH_sequence | Amino acid sequence of VHH | |
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| Ag_label | Antigen Type | |
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| label | Binary label represented by 1 for the binding pair and 0 for the non-binding pair | |
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| subject_species | Species of the subject from which VHH was collected | |
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| subject_name | Name of the subject from which VHH was collected | |
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| subject_sex | Sex of the subject from which VHH was collected | |
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**antigen_sequences.csv** |
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| Column | Description | |
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| ----------- | ------------------------------ | |
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| Ag_label | Antigen Type | |
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| Ag_sequence | Amino acid sequence of antigen | |
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## Links |
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- Project Page: https://avida-sars-cov-2.cognanous.com |
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- Code: https://github.com/cognano/AVIDa-SARS-CoV-2 |
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- Paper: TBD |
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## Citation |
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If you use AVIDa-SARS-CoV-2 in your research, please cite the following paper. |
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```bibtex |
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TBD |
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``` |
