README.md

---
license: mit
language:
  - rna
  - dna
  
tags:
  - Genomic-Language-Modeling
  - OmniGenome Foundation Model
---

# Multi-species Foundation Model for Universal RNA and DNA Downstream Tasks

# Notes
We are keep updating the checkpoints, the current checkpoint is trained for 0.85 epoch.

## Training Examples
Refer to GitHub [https://github.com/yangheng95/OmniGenome](https://github.com/yangheng95/OmniGenome)

## Usage
This model is available for replacing genomic foundation models such as CDSBERT, Nucleotide Transformers, DNABERT2, etc.
```
from transformers import AutoModel
model = AutoModel.from_pretrained("yangheng/OmniGenome-52M", trust_remote_code=True)
```

## Subtasks
- Secondary structure prediction
- Genome Sequence Classification
- Genome Sequence Regression
- Single Nucleotide Repair
- Genome Masked Language Modeling
- etc.

Part of the codes are adapted from ESM2.