Dockerfile

#R-Shiny template https://huggingface.co/spaces/posit/shiny-for-r-template/tree/main
#Py-shiny template https://huggingface.co/spaces/posit/gptneox-chat

#############################
# RSTUDIO-SERVER            #
# VOLUME DOCKERFILE         #
#***************************#
# Set up a jupyter-lab for  #
# developing using deepvats #
#############################

##############
# Base image #
##############
# Adds rstudio server, tiyverse, devtools to rocker/cuda
FROM misantamaria/dvats-rstudio:0

SHELL [ "/bin/bash", "--login", "-c" ]

###############
# Ensure vars #
###############
RUN mkdir /var/run/s6

RUN echo "--> ARGS"
ARG USER_NAME=user \
    USER_ID=1000 \
    GROUP_ID \
    WANDB_ENTITY \
    WANDB_PROJECT


RUN echo "--> ARGS -> ENV"
ENV USER_NAME=$USER_NAME \
    USER_ID=$USER_ID \
    GROUP_ID=$GROUP_ID \
    WANDB_ENTITY=$WANDB_ENTITY \
    WANDB_PROJECT=$WANDB_PROJECT

RUN echo "--> Setup ENV variables"
ENV RETICULATE_PYTHON_ENV=/home/env \
    ROOT=TRUE \
    RETICULATE_MINICONDA_PATH=/home//miniconda \
    CUDA_VISIBLE_DEVICES=0,1,2 \
    ENV_VARS=WANDB_ENTITY,WANDB_PROJECT,USER_NAME,USER_ID,GROUP_ID,PASSWORD,ROOT,CUDA_VISIBLE_DEVICES\
    HOME="/home"


### Copy deepvats
RUN echo "---> Setup volumes" 

#ENV APPDIR='/home/'${USER_NAME}'/app'
ENV APPDIR='/home/app'
ENV DATADIR='$HOME/data/'
ENV DVATSDIR=$HOME'/dvats/'

#--- Volumes
COPY --chown=${USER_ID}:${GROUP_ID} ../r_shiny_app $APPDIR
COPY --chown=${USER_ID}:${GROUP_ID} ${LOCAL_DATA_PATH} $DATADIR
COPY --chown=${USER_ID}:${GROUP_ID} ../dvats $DVATSDIR

RUN  chown ${USER_ID}:${GROUP_ID} /var/run/s6
# Install deepvats

RUN echo "--> Go!"

#CMD [ "/init" ]
#CMD ["R", "--quiet", "-e", "shiny::runApp(host='0.0.0.0', port=7860)"]
ARG RSTUDIO_PORT
ENV RSTUDIO_PORT=$RSTUDIO_PORT

ENV APP="app"

RUN ls -la ${APPDIR}

#CMD [ "R", "-e", "shiny::runApp(host='0.0.0.0'", "port="${RSTUDIO_PORT}, "appDir = '/home/${USER_NAME}/app')" ]
#CMD [ "R -e shiny::runApp(host='0.0.0.0', port=Sys.getenv('RSTUDIO_PORT'), appDir = Sys.getenv('APPDIR'))" ]
#CMD R -e "shiny::runApp(host='0.0.0.0', port=as.numeric(Sys.getenv('RSTUDIO_PORT')), appDir = Sys.getenv('APPDIR'))"
CMD ["R", "--quiet", "-e", "shiny::runApp(Sys.getenv('APP'), host='0.0.0.0', port=7860)"]