silterra commited on
Commit
ec60126
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1 Parent(s): 1cfa9d3

Add basic app and basic Dockerfile

Browse files
Files changed (4) hide show
  1. Dockerfile +27 -0
  2. README.md +2 -1
  3. app.py +2 -0
  4. basic_environment.yml +12 -0
Dockerfile ADDED
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+ FROM ubuntu:latest
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+
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+ RUN apt-get update -y
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+ RUN apt-get install -y sudo wget curl nano git tar bzip2 && rm -rf /var/lib/apt/lists/*
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+
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+ # Build is significantly faster with micromamba, rather than conda
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+ RUN curl -Ls https://micro.mamba.pm/api/micromamba/linux-aarch64/latest | tar -xvj bin/micromamba
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+ RUN ./bin/micromamba shell init -s bash -p ~/micromamba # this writes to your .bashrc file
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+ RUN ./bin/micromamba --version
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+
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+ # Create conda environment first
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+ # This is time-consuming and don't want to reproduce it often
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+ COPY ./basic_environment.yml /
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+
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+ RUN ./bin/micromamba env create --file basic_environment.yml && ./bin/micromamba clean -afy
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+ RUN ./bin/micromamba list > spec-file.txt
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+ RUN echo "micromamba activate basic" >> ~/.bashrc
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+
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+ COPY . /app
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+
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+ WORKDIR /app
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+
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+ EXPOSE 8501
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+
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+ # Entrypoint script which activates conda environment
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+ ENTRYPOINT ["/bin/micromamba", "run", "-n", "basic", "streamlit", "run", "app.py"]
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+ # ENTRYPOINT ["./entrypoint.sh"]
README.md CHANGED
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  ---
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- title: Diffdockpocket Test
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  emoji: πŸš€
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  colorFrom: pink
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  colorTo: indigo
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  sdk: streamlit
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  sdk_version: 1.28.0
 
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  app_file: app.py
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  pinned: false
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  ---
 
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  ---
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+ title: DiffDock-Pocket Test
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  emoji: πŸš€
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  colorFrom: pink
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  colorTo: indigo
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  sdk: streamlit
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  sdk_version: 1.28.0
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+ port: 8501
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  app_file: app.py
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  pinned: false
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  ---
app.py CHANGED
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  import streamlit as st
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  x = st.slider('Select a value')
 
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+ # import torch
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+
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  import streamlit as st
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  x = st.slider('Select a value')
basic_environment.yml ADDED
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+ name: basic
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+ channels:
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+ - nvidia
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+ - pytorch
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+ - defaults
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+ - conda-forge
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+ dependencies:
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+ - python=3.9.17
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+ - pip=23.3.1
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+ - pytorch=1.13.1
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+ - pip:
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+ - streamlit==1.28