priyanandanwar commited on
Commit
47c86a4
·
verified ·
1 Parent(s): 5421bcd

Update main.py

Browse files
Files changed (1) hide show
  1. main.py +13 -8
main.py CHANGED
@@ -13,8 +13,12 @@ os.environ["HF_HOME"] = "/app/huggingface"
13
  app = FastAPI()
14
 
15
  # --- Load Clinical Trials CSV (for metadata lookup) ---
16
- csv_path = "clinical_trials.csv" # Ensure this file is uploaded
17
- df_trials = pd.read_csv(csv_path)
 
 
 
 
18
 
19
  # --- Load FAISS Index ---
20
  dimension = 768
@@ -58,12 +62,13 @@ async def retrieve_trial(request: QueryRequest):
58
 
59
  matched_trials = []
60
  for idx, dist in zip(indices[0], distances[0]):
61
- nct_id = df_trials.iloc[idx]["NCT_ID"] # Get NCT_ID using FAISS index mapping
62
- trial_data = get_trial_info(nct_id) # Fetch complete trial details
63
-
64
- if trial_data:
65
- trial_data["similarity"] = round(100 / (1 + dist), 2) # Convert similarity
66
- matched_trials.append(trial_data)
 
67
 
68
  return {"matched_trials": matched_trials}
69
 
 
13
  app = FastAPI()
14
 
15
  # --- Load Clinical Trials CSV (for metadata lookup) ---
16
+ csv_path = "ctg-studies.csv" # Ensure this file is uploaded
17
+ if os.path.exists(csv_path):
18
+ df_trials = pd.read_csv(csv_path)
19
+ print("✅ CSV File Loaded Successfully!")
20
+ else:
21
+ raise FileNotFoundError(f"❌ CSV File Not Found: {csv_path}. Upload it first.")
22
 
23
  # --- Load FAISS Index ---
24
  dimension = 768
 
62
 
63
  matched_trials = []
64
  for idx, dist in zip(indices[0], distances[0]):
65
+ if idx < len(df_trials): # Ensure index is within bounds
66
+ nct_id = df_trials.iloc[idx]["NCT_ID"] # Get NCT_ID using FAISS index mapping
67
+ trial_data = get_trial_info(nct_id) # Fetch complete trial details
68
+
69
+ if trial_data:
70
+ trial_data["similarity"] = round(100 / (1 + dist), 2) # Convert similarity
71
+ matched_trials.append(trial_data)
72
 
73
  return {"matched_trials": matched_trials}
74