HMO updates
Browse files- about.py +1 -0
- app.py +3 -4
- evaluate.py +60 -36
- requirements.txt +3 -1
about.py
CHANGED
@@ -11,6 +11,7 @@ ENDPOINTS = ["LogD",
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"MBPB",
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"RLM CLint",
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"MGMB"]
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TOKEN = os.environ.get("HF_TOKEN")
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CACHE_PATH=os.getenv("HF_HOME", ".")
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API = HfApi(token=TOKEN)
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"MBPB",
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"RLM CLint",
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"MGMB"]
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+
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TOKEN = os.environ.get("HF_TOKEN")
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CACHE_PATH=os.getenv("HF_HOME", ".")
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API = HfApi(token=TOKEN)
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app.py
CHANGED
@@ -200,21 +200,20 @@ def gradio_interface():
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submit_btn = gr.Button("Submit Predictions")
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message = gr.Textbox(label="Status", lines=1, visible=False)
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-
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submit_btn.click(
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submit_data,
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inputs=[predictions_file, user_state, participant_name, discord_username, email, affiliation],
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outputs=[message],
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-
).
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fn=lambda m: gr.update(value=m, visible=True),
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inputs=[message],
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outputs=[message],
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-
).
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fn=evaluate_data,
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inputs=[filename],
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outputs=[eval_state]
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)
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-
'''
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return demo
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if __name__ == "__main__":
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submit_btn = gr.Button("Submit Predictions")
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message = gr.Textbox(label="Status", lines=1, visible=False)
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+
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submit_btn.click(
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submit_data,
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inputs=[predictions_file, user_state, participant_name, discord_username, email, affiliation],
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outputs=[message],
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+
).success(
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fn=lambda m: gr.update(value=m, visible=True),
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inputs=[message],
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outputs=[message],
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+
).success(
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fn=evaluate_data,
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inputs=[filename],
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outputs=[eval_state]
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)
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return demo
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if __name__ == "__main__":
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evaluate.py
CHANGED
@@ -3,28 +3,40 @@ import pandas as pd
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from pathlib import Path
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from scipy.stats import spearmanr, kendalltau
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from sklearn.metrics import mean_absolute_error, r2_score
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-
from typing import
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from about import ENDPOINTS, API, submissions_repo, results_repo, test_repo
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from huggingface_hub import hf_hub_download
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import datetime
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import io
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import json, tempfile
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-
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-
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-
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-
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-
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-
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-
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out[k] = v
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return out
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def submit_data(predictions_file: str,
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user_state,
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*,
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participant_name: str = "",
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discord_username: str = "",
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email: str = "",
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@@ -46,14 +58,16 @@ def submit_data(predictions_file: str,
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return f"β Error reading results file: {str(e)}"
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if results_df.empty:
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-
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if not set(ENDPOINTS).issubset(set(results_df.columns)):
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-
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# Build destination filename in the dataset
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ts = datetime.datetime.now(datetime.timezone.utc).isoformat(timespec="seconds")
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safe_user =
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destination_csv = f"submissions/{safe_user}_{ts}.csv"
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destination_json = destination_csv.replace(".csv", ".json")
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# Upload the CSV file
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@@ -66,22 +80,31 @@ def submit_data(predictions_file: str,
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)
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# Optional participant record
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"
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API.upload_file(
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path_or_fileobj=meta_bytes,
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path_in_repo=destination_json,
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@@ -132,15 +155,16 @@ def evaluate_data(filename: str) -> None:
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filename=meta_filename,
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)
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with open(meta_path, "r", encoding="utf-8") as f:
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-
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except Exception as e:
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raise gr.Error(f"Failed to load metadata file: {e}. No results written to results dataset.")
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# Write results to results dataset
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results_df['user'] = username
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-
safe_user =
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destination_path = f"results/{safe_user}_{timestamp}_results.csv"
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tmp_name = None
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with tempfile.NamedTemporaryFile(mode="w", suffix=".csv", delete=False) as tmp:
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from pathlib import Path
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from scipy.stats import spearmanr, kendalltau
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from sklearn.metrics import mean_absolute_error, r2_score
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+
from typing import Optional
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from about import ENDPOINTS, API, submissions_repo, results_repo, test_repo
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from huggingface_hub import hf_hub_download
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import datetime
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import io
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import json, tempfile
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import pydantic
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class ParticipantRecord(pydantic.BaseModel):
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hf_username: Optional[str] = pydantic.Field(default=None, description="Hugging Face username")
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participant_name: Optional[str] = pydantic.Field(default=None, description="Participant's real name")
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discord_username: Optional[str] = pydantic.Field(default=None, description="Discord username")
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email: Optional[str] = pydantic.Field(default=None, description="Email address")
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affiliation: Optional[str] = pydantic.Field(default=None, description="Affiliation")
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model_tag: Optional[str] = pydantic.Field(default=None, description="Model tag")
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class SubmissionMetadata(pydantic.BaseModel):
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submission_time_utc: datetime.datetime
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user: str
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original_filename: str
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evaluated: bool
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participant: ParticipantRecord
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def _safeify_username(username: str) -> str:
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return str(username.strip()).replace("/", "_").replace(" ", "_")
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def _unsafify_username(username: str) -> str:
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return str(username.strip()).replace("/", "_").replace(" ", "_")
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def submit_data(predictions_file: str,
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user_state,
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participant_name: str = "",
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discord_username: str = "",
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email: str = "",
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return f"β Error reading results file: {str(e)}"
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if results_df.empty:
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return gr.Error("The uploaded file is empty.")
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if not set(ENDPOINTS).issubset(set(results_df.columns)):
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return gr.Error(f"The uploaded file must contain all endpoint predictions {ENDPOINTS} as columns.")
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# TODO, much more validation logic needed depending on the state of final data
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# Build destination filename in the dataset
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ts = datetime.datetime.now(datetime.timezone.utc).isoformat(timespec="seconds") # should keep default time so can be deserialized correctly
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safe_user = _safeify_username(user_state)
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destination_csv = f"submissions/{safe_user}_{ts}.csv"
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destination_json = destination_csv.replace(".csv", ".json")
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# Upload the CSV file
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)
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# Optional participant record
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try:
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participant_record = ParticipantRecord(
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hf_username=user_state,
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participant_name=participant_name,
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discord_username=discord_username,
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email=email,
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affiliation=affiliation,
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)
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except pydantic.ValidationError as e:
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return f"β Error in participant information: {str(e)}"
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try:
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meta = SubmissionMetadata(
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submission_time_utc=ts,
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original_filename=file_path.name,
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evaluated=False,
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participant=participant_record
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)
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except pydantic.ValidationError as e:
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return f"β Error in metadata information: {str(e)}"
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meta_bytes = io.BytesIO(json.dumps(meta.model_dump(), indent=2).encode("utf-8"))
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API.upload_file(
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path_or_fileobj=meta_bytes,
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path_in_repo=destination_json,
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filename=meta_filename,
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)
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with open(meta_path, "r", encoding="utf-8") as f:
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_meta = json.load(f)
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meta = SubmissionMetadata(**_meta)
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username = meta.participant.hf_username
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timestamp = meta.submission_time_utc
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except Exception as e:
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raise gr.Error(f"Failed to load metadata file: {e}. No results written to results dataset.")
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# Write results to results dataset
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results_df['user'] = username
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safe_user = _unsafify_username(username)
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destination_path = f"results/{safe_user}_{timestamp}_results.csv"
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tmp_name = None
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with tempfile.NamedTemporaryFile(mode="w", suffix=".csv", delete=False) as tmp:
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requirements.txt
CHANGED
@@ -2,4 +2,6 @@ gradio
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datasets
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huggingface_hub
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gradio-leaderboard
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-
plotly
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datasets
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huggingface_hub
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gradio-leaderboard
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plotly
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scipy
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scikit-learn
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