app.py

import os
import pickle
from operator import itemgetter

import cv2
import gradio as gr
import kornia.filters
import kornia.filters
import scipy.ndimage
import torch
import torch.nn as nn
import torch.nn.functional as F
import numpy as np
import matplotlib.pyplot as plt
import random
import zipfile
# from skimage.transform import resize
from torchvision import transforms, models


def conv3x3(in_planes, out_planes, stride=1, groups=1, dilation=1):
    """3x3 convolution with padding"""
    return nn.Conv2d(in_planes, out_planes, kernel_size=3, stride=stride,
                     padding=dilation, groups=groups, bias=False, dilation=dilation)


def conv1x1(in_planes, out_planes, stride=1):
    """1x1 convolution"""
    return nn.Conv2d(in_planes, out_planes, kernel_size=1, stride=stride, bias=False)


class DoubleConv(nn.Module):
    """(convolution => [BN] => ReLU) * 2"""

    def __init__(self, in_channels, out_channels, mid_channels=None):
        super().__init__()
        if not mid_channels:
            mid_channels = out_channels
        norm_layer = nn.BatchNorm2d

        self.conv1 = nn.Conv2d(in_channels, mid_channels, kernel_size=3, padding=1, bias=False)
        self.bn1 = nn.BatchNorm2d(mid_channels)
        self.inst1 = nn.InstanceNorm2d(mid_channels)
        # self.gn1 = nn.GroupNorm(4, mid_channels)
        self.relu = nn.ReLU(inplace=True)
        self.conv2 = nn.Conv2d(mid_channels, out_channels, kernel_size=3, padding=1, bias=False)
        self.bn2 = nn.BatchNorm2d(out_channels)
        self.inst2 = nn.InstanceNorm2d(out_channels)
        # self.gn2 = nn.GroupNorm(4, out_channels)
        self.downsample = None
        if in_channels != out_channels:
            self.downsample = nn.Sequential(
                nn.Conv2d(in_channels, out_channels, kernel_size=1, stride=1, bias=False),
                nn.BatchNorm2d(out_channels),
            )

    def forward(self, x):
        identity = x

        out = self.conv1(x)
        # out = self.bn1(out)
        out = self.inst1(out)
        # out = self.gn1(out)
        out = self.relu(out)

        out = self.conv2(out)
        # out = self.bn2(out)
        out = self.inst2(out)
        # out = self.gn2(out)
        if self.downsample is not None:
            identity = self.downsample(x)

        out += identity
        out = self.relu(out)
        return out


class Down(nn.Module):
    """Downscaling with maxpool then double conv"""

    def __init__(self, in_channels, out_channels):
        super().__init__()
        self.maxpool_conv = nn.Sequential(
            nn.MaxPool2d(2),
            DoubleConv(in_channels, out_channels)
        )

    def forward(self, x):
        return self.maxpool_conv(x)


class Up(nn.Module):
    """Upscaling then double conv"""

    def __init__(self, in_channels, out_channels, bilinear=True):
        super().__init__()

        # if bilinear, use the normal convolutions to reduce the number of channels
        if bilinear:
            self.up = nn.Upsample(scale_factor=2, mode='bilinear', align_corners=True)
            self.conv = DoubleConv(in_channels, out_channels, in_channels // 2)
        else:
            if in_channels == out_channels:
                self.up = nn.Identity()
            else:
                self.up = nn.ConvTranspose2d(in_channels, in_channels // 2, kernel_size=2, stride=2)
            self.conv = DoubleConv(in_channels, out_channels)

    def forward(self, x1, x2):
        x1 = self.up(x1)
        # input is CHW
        diffY = x2.size()[2] - x1.size()[2]
        diffX = x2.size()[3] - x1.size()[3]

        x1 = F.pad(x1, [diffX // 2, diffX - diffX // 2,
                        diffY // 2, diffY - diffY // 2])
        # if you have padding issues, see
        # https://github.com/HaiyongJiang/U-Net-Pytorch-Unstructured-Buggy/commit/0e854509c2cea854e247a9c615f175f76fbb2e3a
        # https://github.com/xiaopeng-liao/Pytorch-UNet/commit/8ebac70e633bac59fc22bb5195e513d5832fb3bd
        x = torch.cat([x2, x1], dim=1)
        return self.conv(x)


class OutConv(nn.Module):
    def __init__(self, in_channels, out_channels):
        super(OutConv, self).__init__()
        self.conv = nn.Conv2d(in_channels, out_channels, kernel_size=1)

    def forward(self, x):
        return self.conv(x)

class GaussianLayer(nn.Module):
    def __init__(self):
        super(GaussianLayer, self).__init__()
        self.seq = nn.Sequential(
            # nn.ReflectionPad2d(10),
            nn.Conv2d(1, 1, 5, stride=1, padding=2, bias=False)
        )

        self.weights_init()
    def forward(self, x):
        return self.seq(x)

    def weights_init(self):
        n= np.zeros((5,5))
        n[3,3] = 1
        k = scipy.ndimage.gaussian_filter(n,sigma=1)
        for name, f in self.named_parameters():
            f.data.copy_(torch.from_numpy(k))

def conv3x3(in_planes, out_planes, stride=1, groups=1, dilation=1):
    """3x3 convolution with padding"""
    return nn.Conv2d(in_planes, out_planes, kernel_size=3, stride=stride,
                     padding=dilation, groups=groups, bias=False, dilation=dilation)

class Decoder(nn.Module):
    def __init__(self):
        super(Decoder, self).__init__()
        self.up1 = Up(2048, 1024 // 1, False)
        self.up2 = Up(1024, 512 // 1, False)
        self.up3 = Up(512, 256 // 1, False)
        self.conv2d_2_1 = conv3x3(256, 128)
        self.gn1 = nn.GroupNorm(4, 128)
        self.instance1 = nn.InstanceNorm2d(128)
        self.up4 = Up(128, 64 // 1, False)
        self.upsample4 = nn.Upsample(scale_factor=2, mode='bilinear', align_corners=True)
        # self.upsample4 = nn.ConvTranspose2d(64, 64, 2, stride=2)
        self.upsample4_conv = DoubleConv(64, 64, 64 // 2)
        self.up_ = Up(128, 128 // 1, False)
        self.conv2d_2_2 = conv3x3(128, 6)
        self.instance2 = nn.InstanceNorm2d(6)
        self.gn2 = nn.GroupNorm(3, 6)
        self.gaussian_blur = GaussianLayer()
        self.up5 = Up(6, 3, False)
        self.conv2d_2_3 = conv3x3(3, 1)
        self.instance3 = nn.InstanceNorm2d(1)
        self.gaussian_blur = GaussianLayer()
        self.kernel = nn.Parameter(torch.tensor(
            [[[0.0, 0.0, 0.0], [0.0, 1.0, random.uniform(-1.0, 0.0)], [0.0, 0.0, 0.0]],
             [[0.0, 0.0, 0.0], [0.0, 1.0, 0.0], [0.0, 0.0, random.uniform(-1.0, 0.0)]],
             [[0.0, 0.0, 0.0], [0.0, 1.0, 0.0], [0.0, random.uniform(random.uniform(-1.0, 0.0), -0.0), 0.0]],
             [[0.0, 0.0, 0.0], [0.0, 1.0, 0.0], [random.uniform(-1.0, 0.0), 0.0, 0.0]],
             [[0.0, 0.0, 0.0], [random.uniform(-1.0, 0.0), 1.0, 0.0], [0.0, 0.0, 0.0]],
             [[random.uniform(-1.0, 0.0), 0.0, 0.0], [0.0, 1.0, 0.0], [0.0, 0.0, 0.0]],
             [[0.0, random.uniform(-1.0, 0.0), 0.0], [0.0, 1.0, 0.0], [0.0, 0.0, 0.0]],
             [[0.0, 0.0, random.uniform(-1.0, 0.0)], [0.0, 1.0, 0.0], [0.0, 0.0, 0.0]], ],
        ).unsqueeze(1))

        self.nms_conv = nn.Conv2d(1, 1, kernel_size=3, stride=1, padding=1, bias=False, groups=1)
        with torch.no_grad():
            self.nms_conv.weight = self.kernel.float()


class Resnet_with_skip(nn.Module):
    def __init__(self, model):
        super(Resnet_with_skip, self).__init__()
        self.model = model
        self.decoder = Decoder()

    def forward_pred(self, image):
        pred_net = self.model(image)
        return pred_net

    def forward_decode(self, image):
        identity = image

        image = self.model.conv1(image)
        image = self.model.bn1(image)
        image = self.model.relu(image)
        image1 = self.model.maxpool(image)

        image2 = self.model.layer1(image1)
        image3 = self.model.layer2(image2)
        image4 = self.model.layer3(image3)
        image5 = self.model.layer4(image4)

        reconst1 = self.decoder.up1(image5, image4)
        reconst2 = self.decoder.up2(reconst1, image3)
        reconst3 = self.decoder.up3(reconst2, image2)
        reconst = self.decoder.conv2d_2_1(reconst3)
        # reconst = self.decoder.instance1(reconst)
        reconst = self.decoder.gn1(reconst)
        reconst = F.relu(reconst)
        reconst4 = self.decoder.up4(reconst, image1)
        # reconst5 = self.decoder.upsample4(reconst4)
        reconst5 = self.decoder.upsample4(reconst4)
        # reconst5 = self.decoder.upsample4_conv(reconst4)
        reconst5 = self.decoder.up_(reconst5, image)
        # reconst5 = reconst5 + image
        reconst5 = self.decoder.conv2d_2_2(reconst5)
        reconst5 = self.decoder.instance2(reconst5)
        # reconst5 = self.decoder.gn2(reconst5)
        reconst5 = F.relu(reconst5)
        reconst = self.decoder.up5(reconst5, identity)
        reconst = self.decoder.conv2d_2_3(reconst)
        # reconst = self.decoder.instance3(reconst)
        reconst = F.relu(reconst)

        # return reconst

        blurred = self.decoder.gaussian_blur(reconst)

        gradients = kornia.filters.spatial_gradient(blurred, normalized=False)
        # Unpack the edges
        gx = gradients[:, :, 0]
        gy = gradients[:, :, 1]

        angle = torch.atan2(gy, gx)

        # Radians to Degrees
        import math
        angle = 180.0 * angle / math.pi

        # Round angle to the nearest 45 degree
        angle = torch.round(angle / 45) * 45
        nms_magnitude = self.decoder.nms_conv(blurred)
        # nms_magnitude = F.conv2d(blurred, kernel.unsqueeze(1), padding=kernel.shape[-1]//2)

        # Non-maximal suppression
        # Get the indices for both directions
        positive_idx = (angle / 45) % 8
        positive_idx = positive_idx.long()

        negative_idx = ((angle / 45) + 4) % 8
        negative_idx = negative_idx.long()

        # Apply the non-maximum suppression to the different directions
        channel_select_filtered_positive = torch.gather(nms_magnitude, 1, positive_idx)
        channel_select_filtered_negative = torch.gather(nms_magnitude, 1, negative_idx)

        channel_select_filtered = torch.stack(
            [channel_select_filtered_positive, channel_select_filtered_negative], 1
        )

        # is_max = channel_select_filtered.min(dim=1)[0] > 0.0

        # magnitude = reconst * is_max

        thresh = nn.Threshold(0.01, 0.01)
        max_matrix = channel_select_filtered.min(dim=1)[0]
        max_matrix = thresh(max_matrix)
        magnitude = torch.mul(reconst, max_matrix)
        # magnitude = torchvision.transforms.functional.invert(magnitude)
        # magnitude = self.decoder.sharpen(magnitude)
        # magnitude = self.decoder.threshold(magnitude)
        magnitude = kornia.enhance.adjust_gamma(magnitude, 2.0)
        # magnitude = F.leaky_relu(magnitude)
        return magnitude

    def forward(self, image):
        reconst = self.forward_decode(image)
        pred = self.forward_pred(image)
        return pred, reconst


def create_retrieval_figure(res):
    fig = plt.figure(figsize=[10 * 3, 10 * 3])
    cols = 5
    rows = 2
    ax_query = fig.add_subplot(rows, 1, 1)
    plt.rcParams['figure.facecolor'] = 'white'
    plt.axis('off')
    ax_query.set_title('Top 10 most similar scarabs', fontsize=40)
    names = ""
    for i, image in zip(range(len(res)), res):
        current_image_path = image.split("/")[3]+"/"+image.split("/")[4]
        if i==0: continue
        if i < 11:
            archive = zipfile.ZipFile('dataset.zip', 'r')
            imgfile = archive.read(current_image_path)
            image = cv2.imdecode(np.frombuffer(imgfile, np.uint8), 1)
            # image_resized = cv2.resize(image, (224, 224), interpolation=cv2.INTER_LINEAR)
            ax = fig.add_subplot(rows, cols, i)
            plt.axis('off')
            plt.imshow(cv2.cvtColor(image, cv2.COLOR_BGR2RGB))
            item_uuid = current_image_path.split("/")[1].split("_photoUUID")[0].split("itemUUID_")[1]
            ax.set_title('Top {}'.format(i), fontsize=40)
            names = names + "Top " + str(i) + " item UUID is " + item_uuid + "\n"
    return fig, names

def knn_calc(image_name, query_feature, features):
    current_image_feature = features[image_name]
    criterion = torch.nn.CosineSimilarity(dim=1)
    dist = criterion(query_feature, current_image_feature).mean()
    dist = -dist.item()
    return dist

checkpoint_path = "multi_label.pth.tar"

resnet = models.resnet101(pretrained=True)
num_ftrs = resnet.fc.in_features
resnet.fc = nn.Linear(num_ftrs, 13)
model = Resnet_with_skip(resnet)
checkpoint = torch.load(checkpoint_path, map_location="cpu")
model.load_state_dict(checkpoint)
embedding_model_test = torch.nn.Sequential(*(list(model.children())[:-1]))

periods_model = models.resnet101(pretrained=True)
periods_model.fc = nn.Linear(num_ftrs, 5)
periods_checkpoint = torch.load("periods.pth.tar", map_location="cpu")
periods_model.load_state_dict(periods_checkpoint)

with open('query_images_paths.pkl', 'rb') as fp:
    query_images_paths = pickle.load(fp)

with open('features.pkl', 'rb') as fp:
    features = pickle.load(fp)



model.eval()
transform = transforms.Compose([
            transforms.Resize((224, 224)),
            transforms.Grayscale(num_output_channels=3),
            transforms.ToTensor(),
            transforms.Normalize([0.5, 0.5, 0.5], [0.5, 0.5, 0.5])
        ])
invTrans = transforms.Compose([transforms.Normalize(mean=[0., 0., 0.],
                                                    std=[1 / 0.5, 1 / 0.5, 1 / 0.5]),
                               transforms.Normalize(mean=[-0.5, -0.5, -0.5],
                                                    std=[1., 1., 1.]),
                               ])

labels = ['ankh', 'anthropomorphic', 'bands', 'beetle', 'bird', 'circles', 'cross', 'duck', 'head', 'ibex', 'lion', 'sa', 'snake']

periods_labels = ["MB1", "MB2", "LB", "Iron1", 'Iron2']
periods_model.eval()

def predict(inp):
    image_tensor = transform(inp)
    with torch.no_grad():
        classification, reconstruction = model(image_tensor.unsqueeze(0))
        periods_classification = periods_model(image_tensor.unsqueeze(0))
        recon_tensor = reconstruction[0].repeat(3, 1, 1)
        recon_tensor = invTrans(kornia.enhance.invert(recon_tensor))
        plot_recon = recon_tensor.permute(1, 2, 0).detach().numpy()
        w, h = inp.size
        # plot_recon = resize(plot_recon, (h, w))
        m = nn.Sigmoid()
        y = m(classification)
        preds = []
        for sample in y:
            for i in sample:
                if i >=0.8:
                    preds.append(1)
                else:
                    preds.append(0)
        confidences = {}
        true_labels = ""
        for i in range(len(labels)):
            if preds[i]==1:
                if true_labels=="":
                    true_labels = true_labels + labels[i]
                else:
                    true_labels = true_labels + "&" + labels[i]
        confidences[true_labels] = torch.tensor(1.0)

        periods_prediction = torch.nn.functional.softmax(periods_classification[0], dim=0)
        periods_confidences = {periods_labels[i]: periods_prediction[i] for i in range(len(periods_labels))}
        feature = embedding_model_test(image_tensor.unsqueeze(0))
        dists = dict()
        with torch.no_grad():
            for i, image_name in enumerate(query_images_paths):
                dist = knn_calc(image_name, feature, features)
                dists[image_name] = dist
        res = dict(sorted(dists.items(), key=itemgetter(1)))
    fig, names = create_retrieval_figure(res)
    return confidences, periods_confidences, plot_recon, fig, names


gr.Interface(fn=predict,
             inputs=gr.Image(type="pil"),
             title="ArcAid: Analysis of Archaeological Artifacts using Drawings",
             description="Easily classify artifacs, retrieve similar ones and generate drawings. "
                         "https://arxiv.org/abs/2211.09480.",
             # examples=['anth.jpg', 'beetle_snakes.jpg', 'bird.jpg', 'cross.jpg', 'ibex.jpg',
             #           'lion.jpg', 'lion2.jpg', 'sa.jpg'],
             outputs=[gr.Label(num_top_classes=1), gr.Label(num_top_classes=1), "image", 'plot', 'text'], ).launch(share=True, enable_queue=True)