| #!/usr/bin/python | |
| # coding: utf-8 | |
| # Author: LE YUAN | |
| # Date: 2020-06-25 | |
| # This python script is to obtain protein sequence by uniprot protein id | |
| from urllib import request | |
| # This function is to obtain the protein sequence according to the protein id from Uniprot API | |
| # https://www.uniprot.org/uniprot/A0A1D8PIP5.fasta | |
| # https://www.uniprot.org/help/api_idmapping | |
| def uniprot_sequence(id) : | |
| url = "https://www.uniprot.org/uniprot/%s.fasta" % id | |
| IdSeq = dict() | |
| try : | |
| data = request.urlopen(url) | |
| respdata = data.read().decode("utf-8").strip() | |
| IdSeq[id] = "".join(respdata.split("\n")[1:]) | |
| except : | |
| print(id, "can not find from uniprot!") | |
| IdSeq[id] = None | |
| print(IdSeq[id]) | |
| # return IdSeq[id] | |
| def main() : | |
| uniprot_sequence('P49384') | |
| if __name__ == "__main__" : | |
| main() | |