cleanup superfluous code and libraries

app.py

@@ -8,11 +8,10 @@ from langchain_core.documents import Document
 from langchain_community.document_loaders import PyMuPDFLoader
 from langchain_experimental.text_splitter import SemanticChunker
 from langchain_community.vectorstores import Qdrant
-from langchain_community.embeddings import HuggingFaceEmbeddings
+from langchain_huggingface import HuggingFaceEmbeddings
 from langchain_core.output_parsers import StrOutputParser
 from langchain_openai import ChatOpenAI
 from langchain_core.prompts import ChatPromptTemplate
-from langgraph.graph import START, StateGraph
 from langchain.tools import tool
 from langchain.schema import HumanMessage
 from typing_extensions import List, TypedDict
@@ -27,26 +26,21 @@ OUTPUT_PATH = "output/"
 os.makedirs(UPLOAD_PATH, exist_ok=True)
 os.makedirs(OUTPUT_PATH, exist_ok=True)
 
-# Initialize embeddings model
 model_id = "Snowflake/snowflake-arctic-embed-m"
 embedding_model = HuggingFaceEmbeddings(model_name=model_id)
-
-# Define semantic chunker
 semantic_splitter = SemanticChunker(embedding_model)
-
-# Initialize LLM
 llm = ChatOpenAI(model="gpt-4o-mini")
 
-# Define RAG prompt
+
+# comparison prompt
 export_prompt = """
 CONTEXT:
+CONTEXT:
 {context}
 
 QUERY:
 {question}
 
-You are a helpful assistant. Use the available context to answer the question.
-
 Between these two files containing protocols, identify and match **entire assessment sections** based on conceptual similarity. Do NOT match individual questions.
 
 ### **Output Format:**
@@ -101,6 +95,8 @@ Provide a natural-language response using the given information. If you do not k
 query_prompt = ChatPromptTemplate.from_template(QUERY_PROMPT)
 
 
+## tool configurations
+
 @tool
 def document_query_tool(question: str) -> str:
     """Retrieves relevant document sections and answers questions based on the uploaded documents."""
@@ -122,8 +118,6 @@ def document_query_tool(question: str) -> str:
         "context": retrieved_docs
     }
 
-
-
 @tool
 def document_comparison_tool(question: str) -> str:
     """Compares documents, identifies matched elements, exports them as JSON, formats into CSV, and provides a download link."""
@@ -158,12 +152,6 @@ def document_comparison_tool(question: str) -> str:
     except json.JSONDecodeError:
         return "Error: Response is not valid JSON."
 
-
-
-tool_belt = [document_query_tool, document_comparison_tool]
-model = ChatOpenAI(model="gpt-4o", temperature=0)
-model = model.bind_tools(tool_belt)
-
 async def process_files(files: list[cl.File]):
     documents_with_metadata = []
     for file in files:
@@ -226,4 +214,4 @@ async def handle_message(message: cl.Message):
             await cl.Message(file_path).send()
     else:
         response_text = document_query_tool.invoke(user_input)
-        await cl.Message(response_text["messages"][0].content).send()
+        await cl.Message(response_text["messages"][0].content).send()

pyproject.toml

@@ -5,53 +5,33 @@ description = "midterm POC huggingface project"
 readme = "README.md"
 requires-python = ">=3.13"
 dependencies = [
-    "chainlit",
-    "langchain",
-    "langchain_community",
-    "tqdm",
-    "PyMuPDF",
-    "openai>=1.59.9",
-    "pypdf2>=3.0.1",
-    "websockets",
-    "qdrant-client",
-    "langchain",
-    "langchain-community",
-    "langchain-openai",
-    "unstructured",
-    "pymupdf",
-    "qdrant-client",
-    "langgraph",
-    "langchain-core",
-    "langchain-openai",
-    "langchain-community",
-    "ragas",
-    "langchain_experimental",
-    ###review
-    ### cleanup
-    "langchain-core==0.3.31",
-    "langchain==0.3.15",
-    "langchain-community==0.3.15",
-    "langchain-openai==0.3.1",
-    "langchain-qdrant==0.2.0",
-    "langchain-text-splitters>=0.3.5",
-    "langchain-huggingface==0.1.2",
-    #"langgraph>=0.2.67",
-    "langsmith>=0.3.1",
-    "lxml>=5.3.0",
-    ###notebook
-    "ipykernel",
-    "ipywidgets",
-    "IProgress",
-    "huggingface_hub",
-    "wandb",
-    "transformers",
-    "accelerate",
-    "torch",
-    #### ragas
-    #"ragas==0.2.10"
-    #"FAISS"
-    #remove only used for testing
-    #"cohere",
-    #"langchain_cohere",
-    #"arxiv"
-]
+"IProgress",
+"PyMuPDF",
+"accelerate",
+"chainlit",
+"huggingface_hub",
+"ipykernel",
+"ipywidgets",
+"langchain",
+"langchain-community",
+"langchain-core",
+"langchain-experimental",
+"langchain-huggingface",
+"langchain-openai",
+"langchain-qdrant",
+"langchain-text-splitters",
+"langgraph",
+"langsmith",
+"lxml",
+"openai",
+"pymupdf",
+"pypdf2",
+"qdrant-client",
+"ragas",
+"torch",
+"transformers",
+"tqdm",
+"unstructured",
+"wandb",
+"websockets"
+]

requirements.txt

@@ -0,0 +1,210 @@
+accelerate==1.4.0
+aiofiles==23.2.1
+aiohappyeyeballs==2.4.6
+aiohttp==3.11.13
+aiosignal==1.3.2
+annotated-types==0.7.0
+anyio==4.8.0
+appdirs==1.4.4
+asttokens==3.0.0
+asyncer==0.0.7
+attrs==25.1.0
+backoff==2.2.1
+beautifulsoup4==4.13.3
+bidict==0.23.1
+certifi==2025.1.31
+cffi==1.17.1
+chainlit==2.2.1
+chardet==5.2.0
+charset-normalizer==3.4.1
+chevron==0.14.0
+click==8.1.8
+comm==0.2.2
+cryptography==44.0.1
+dataclasses-json==0.6.7
+datasets==3.3.2
+debugpy==1.8.12
+decorator==5.2.1
+deepdiff==8.2.0
+deprecated==1.2.18
+dill==0.3.8
+diskcache==5.6.3
+distro==1.9.0
+docker-pycreds==0.4.0
+emoji==2.14.1
+executing==2.2.0
+fastapi==0.115.8
+filelock==3.17.0
+filetype==1.2.0
+frozenlist==1.5.0
+fsspec==2024.12.0
+gitdb==4.0.12
+gitpython==3.1.44
+googleapis-common-protos==1.68.0
+greenlet==3.1.1
+grpcio==1.70.0
+grpcio-tools==1.70.0
+h11==0.14.0
+h2==4.2.0
+hpack==4.1.0
+httpcore==1.0.7
+httpx==0.28.1
+httpx-sse==0.4.0
+huggingface-hub==0.29.1
+hyperframe==6.1.0
+idna==3.10
+importlib-metadata==8.5.0
+iprogress==0.4
+ipykernel==6.29.5
+ipython==8.32.0
+ipywidgets==8.1.5
+jedi==0.19.2
+jinja2==3.1.5
+jiter==0.8.2
+joblib==1.4.2
+jsonpatch==1.33
+jsonpath-python==1.0.6
+jsonpointer==3.0.0
+jupyter-client==8.6.3
+jupyter-core==5.7.2
+jupyterlab-widgets==3.0.13
+langchain==0.3.15
+langchain-community==0.3.15
+langchain-core==0.3.31
+langchain-experimental==0.3.4
+langchain-huggingface==0.1.2
+langchain-openai==0.3.1
+langchain-qdrant==0.2.0
+langchain-text-splitters==0.3.5
+langdetect==1.0.9
+langgraph==0.2.74
+langgraph-checkpoint==2.0.16
+langgraph-sdk==0.1.53
+langsmith==0.3.10
+lazify==0.4.0
+literalai==0.1.103
+lxml==5.3.1
+markupsafe==3.0.2
+marshmallow==3.26.1
+matplotlib-inline==0.1.7
+mpmath==1.3.0
+msgpack==1.1.0
+multidict==6.1.0
+multiprocess==0.70.16
+mypy-extensions==1.0.0
+nest-asyncio==1.6.0
+networkx==3.4.2
+nltk==3.9.1
+numpy==2.2.3
+nvidia-cublas-cu12==12.4.5.8
+nvidia-cuda-cupti-cu12==12.4.127
+nvidia-cuda-nvrtc-cu12==12.4.127
+nvidia-cuda-runtime-cu12==12.4.127
+nvidia-cudnn-cu12==9.1.0.70
+nvidia-cufft-cu12==11.2.1.3
+nvidia-curand-cu12==10.3.5.147
+nvidia-cusolver-cu12==11.6.1.9
+nvidia-cusparse-cu12==12.3.1.170
+nvidia-cusparselt-cu12==0.6.2
+nvidia-nccl-cu12==2.21.5
+nvidia-nvjitlink-cu12==12.4.127
+nvidia-nvtx-cu12==12.4.127
+openai==1.64.0
+opentelemetry-api==1.29.0
+opentelemetry-exporter-otlp==1.29.0
+opentelemetry-exporter-otlp-proto-common==1.29.0
+opentelemetry-exporter-otlp-proto-grpc==1.29.0
+opentelemetry-exporter-otlp-proto-http==1.29.0
+opentelemetry-instrumentation==0.50b0
+opentelemetry-proto==1.29.0
+opentelemetry-sdk==1.29.0
+opentelemetry-semantic-conventions==0.50b0
+orderly-set==5.3.0
+orjson==3.10.15
+packaging==24.2
+pandas==2.2.3
+parso==0.8.4
+pexpect==4.9.0
+pillow==11.1.0
+platformdirs==4.3.6
+portalocker==2.10.1
+prompt-toolkit==3.0.50
+propcache==0.3.0
+protobuf==5.29.3
+psutil==7.0.0
+ptyprocess==0.7.0
+pure-eval==0.2.3
+pyarrow==19.0.1
+pycparser==2.22
+pydantic==2.10.6
+pydantic-core==2.27.2
+pydantic-settings==2.8.0
+pygments==2.19.1
+pyjwt==2.10.1
+pymupdf==1.25.3
+pypdf==5.3.0
+pypdf2==3.0.1
+python-dateutil==2.9.0.post0
+python-dotenv==1.0.1
+python-engineio==4.11.2
+python-iso639==2025.2.18
+python-magic==0.4.27
+python-multipart==0.0.18
+python-socketio==5.12.1
+pytz==2025.1
+pyyaml==6.0.2
+pyzmq==26.2.1
+qdrant-client==1.13.2
+ragas==0.2.13
+rapidfuzz==3.12.1
+regex==2024.11.6
+requests==2.32.3
+requests-toolbelt==1.0.0
+safetensors==0.5.2
+scikit-learn==1.6.1
+scipy==1.15.2
+sentence-transformers==3.4.1
+sentry-sdk==2.22.0
+setproctitle==1.3.5
+setuptools==75.8.0
+simple-websocket==1.1.0
+six==1.17.0
+smmap==5.0.2
+sniffio==1.3.1
+soupsieve==2.6
+sqlalchemy==2.0.38
+stack-data==0.6.3
+starlette==0.41.3
+sympy==1.13.1
+syncer==2.0.3
+tabulate==0.9.0
+tenacity==9.0.0
+threadpoolctl==3.5.0
+tiktoken==0.9.0
+tokenizers==0.21.0
+tomli==2.2.1
+torch==2.6.0
+tornado==6.4.2
+tqdm==4.67.1
+traitlets==5.14.3
+transformers==4.49.0
+triton==3.2.0
+typing-extensions==4.12.2
+typing-inspect==0.9.0
+tzdata==2025.1
+unstructured==0.14.8
+unstructured-client==0.25.9
+uptrace==1.29.0
+urllib3==2.3.0
+uvicorn==0.34.0
+wandb==0.19.7
+watchfiles==0.20.0
+wcwidth==0.2.13
+websockets==15.0
+widgetsnbextension==4.0.13
+wrapt==1.17.2
+wsproto==1.2.0
+xxhash==3.5.0
+yarl==1.18.3
+zipp==3.21.0
+zstandard==0.23.0

uv.lock

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-[[package]]
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 [[package]]
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@@ -1363,15 +1288,12 @@ version = "0.1.0"
 source = { virtual = "." }
 dependencies = [
     { name = "accelerate" },
-    { name = "arxiv" },
     { name = "chainlit" },
-    { name = "cohere" },
     { name = "huggingface-hub" },
     { name = "iprogress" },
     { name = "ipykernel" },
     { name = "ipywidgets" },
     { name = "langchain" },
-    { name = "langchain-cohere" },
     { name = "langchain-community" },
     { name = "langchain-core" },
     { name = "langchain-experimental" },
@@ -1398,32 +1320,25 @@ dependencies = [
 [package.metadata]
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-    { name = "arxiv" },
     { name = "chainlit" },
-    { name = "cohere" },
     { name = "huggingface-hub" },
     { name = "iprogress" },
     { name = "ipykernel" },
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     { name = "langchain" },
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     { name = "langchain-experimental" },
-    { name = "langchain-huggingface", specifier = "==0.1.2" },
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-    { name = "langchain-qdrant", specifier = "==0.2.0" },
-    { name = "langchain-text-splitters", specifier = ">=0.3.5" },
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-    { name = "openai", specifier = ">=1.59.9" },
+    { name = "langsmith" },
+    { name = "lxml" },
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+    { name = "pypdf2" },
     { name = "qdrant-client" },
     { name = "ragas" },
     { name = "torch" },
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