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Update app.py
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app.py
CHANGED
@@ -27,7 +27,7 @@ st.sidebar.markdown('Using transformer model')
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## Loading in dataset
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#df = pd.read_csv('mtsamples_small.csv',index_col=0)
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df = pd.read_csv("
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#df.shape
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df['HADM_ID'] = df['HADM_ID'].astype(str).apply(lambda x: x.replace('.0',''))
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@@ -50,7 +50,7 @@ st.sidebar.header("Search for Patient:")
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patientid = df['Patient_ID']
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patient = st.sidebar.selectbox('Select Patient ID:', patientid)
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admissionid = df['Admission_ID'].loc[df['Patient_ID'] == patient]
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HospitalAdmission = st.sidebar.selectbox('', admissionid)
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#Another way to for filter selection
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#patient = st.sidebar.multiselect(
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@@ -113,6 +113,7 @@ runtext =st.text_area('Input Clinical Note here:', str(original_text2), height=3
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reference_text = original_text['Reference_text'].values
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#===== Pysummarization =====
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from pysummarization.nlpbase.auto_abstractor import AutoAbstractor
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from pysummarization.tokenizabledoc.simple_tokenizer import SimpleTokenizer
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@@ -324,4 +325,6 @@ def run_model(input_text):
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if st.button('Submit'):
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run_model(runtext)
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st.text_area('Reference text', str(reference_text))
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## Loading in dataset
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#df = pd.read_csv('mtsamples_small.csv',index_col=0)
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df = pd.read_csv("demo_shpi_w_rouge25Nov.csv")
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#df.shape
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df['HADM_ID'] = df['HADM_ID'].astype(str).apply(lambda x: x.replace('.0',''))
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patientid = df['Patient_ID']
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patient = st.sidebar.selectbox('Select Patient ID:', patientid)
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admissionid = df['Admission_ID'].loc[df['Patient_ID'] == patient]
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HospitalAdmission = st.sidebar.selectbox(' ', admissionid)
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#Another way to for filter selection
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#patient = st.sidebar.multiselect(
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reference_text = original_text['Reference_text'].values
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#===== Pysummarization =====
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from pysummarization.nlpbase.auto_abstractor import AutoAbstractor
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from pysummarization.tokenizabledoc.simple_tokenizer import SimpleTokenizer
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if st.button('Submit'):
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run_model(runtext)
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st.text_area('Reference text', str(reference_text))
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