color

.gitignore

@@ -0,0 +1,8 @@
+.Rproj.user
+.Rhistory
+.RData
+.Ruserdata
+.ipynb_checkpoints
+pad-us.Rproj
+*.vrt
+mobi-red

color.txt

@@ -0,0 +1,50 @@
+1 252 226 220 0
+2 251 220 214 0
+3 250 214 209 0
+4 249 209 204 0
+5 249 203 198 0
+6 248 198 193 50
+7 247 192 188 50
+8 246 187 182 50
+9 246 181 177 50
+10 245 176 172 50
+11 244 170 166 255
+12 243 164 161 255
+13 243 159 156 255
+14 242 153 151 255
+15 241 148 145 255
+16 240 142 140 255
+17 240 137 135 255
+18 239 131 129 255
+19 238 126 124 255
+20 238 120 119 255
+21 237 114 113 255
+22 236 109 108 255
+23 235 103 103 255
+24 235 98 97 255
+25 234 92 92 255
+26 231 88 89 255
+27 225 85 88 255
+28 220 82 87 255
+29 215 79 86 255
+30 209 76 85 255
+31 204 73 84 255
+32 198 70 83 255
+33 193 67 82 255
+34 188 64 81 255
+35 182 61 80 255
+36 177 58 79 255
+37 172 55 78 255
+38 166 52 77 255
+39 161 49 76 255
+40 155 46 75 255
+41 150 43 74 255
+42 145 40 73 255
+43 139 37 72 255
+44 134 34 71 255
+45 128 31 70 255
+46 123 28 69 255
+47 118 25 68 255
+48 112 22 67 255
+49 107 19 66 255
+50 102 16 66 255

colormap.R

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+
+x <- grDevices::colorRampPalette(c("#fce2dc", "#ea5a5a", "#661042"), bias=1, alpha=TRUE)  
+y <- x(50) |> grDevices::col2rgb(alpha=TRUE) |> t()  |> as.data.frame()
+y$alpha[1:5] <- 0
+y$alpha[6:10] <- 50
+
+y |> write.table("color.txt", quote = FALSE, col.names = FALSE)
+

tileserver-creator.sh

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+#!/bin/bash
+
+
+#git lfs track "*.html"
+#git lfs track "*.png"
+
+
+gdal_translate -of VRT -ot Byte -scale /vsicurl/https://minio.carlboettiger.info/public-biodiversity/mobi/species-richness-all/SpeciesRichness_All.tif temp.vrt
+
+gdaldem color-relief -of GTiff temp.vrt color.txt richness.vrt -alpha 
+gdal2tiles.py --xyz --zoom=1-10 --processes=24 richness.vrt mobi-red
+
+mc cp -r mobi-red/ nvme/shared-data/mobi-tiles/red
+# 
+
+ogr2ogr pad-us3.pmtiles /vsicurl/https://data.source.coop/cboettig/pad-us-3/pad-us3-combined.fgb
+
+
+