:lion:

inat-ranges.R

@@ -6,8 +6,6 @@ library(mapgl)
 
 richness <- function(inat, aoi, rank = NULL, taxon = NULL) {
 
-  taxa <- open_dataset("https://minio.carlboettiger.info/public-inat/taxonomy/taxa.csv", format = "csv", recursive = FALSE)
-
   hash <- digest::digest(list(aoi, rank, taxon))
   s3 <- paste0("s3://public-data/cache/inat/", hash, ".h3j")
 
@@ -15,7 +13,10 @@ richness <- function(inat, aoi, rank = NULL, taxon = NULL) {
 
   # filter
   if (!is.null(rank) && !is.null(taxon)) {
+    taxa <- open_dataset("https://minio.carlboettiger.info/public-inat/taxonomy/taxa.parquet",
+           recursive = FALSE)
     inat <- taxa |> 
+      rename(taxon_id = id) |>
       filter(.data[[rank]] == taxon) |> 
       select(taxon_id) |>
       inner_join(inat, by = "taxon_id")

test.R

@@ -1,3 +1,5 @@
+
+
 ## Illustrate/test core app functionality without shiny
 library(dplyr)
 library(duckdbfs)
@@ -18,18 +20,23 @@ aoi <- spData::us_states
 aoi <- spData::world
 
 # publish richness at the aoi (bbox or poly)
-richness(inat, aoi)
-m <- richness_map()
-
+url <- richness(inat, aoi)
+m <- maplibre() |> add_draw_control()
+m <- richness_map(url = url)
+m
 library(htmlwidgets)
 htmlwidgets::saveWidget(m, "total-richness.html")
 
 
 # publish richness at the aoi (bbox or poly)
-richness(inat, aoi, rank = "class", taxon = "Aves")
-m <- richness_map()
+url <- richness(inat, aoi, rank = "class", taxon = "Aves")
+m <- richness_map(url = url)
 htmlwidgets::saveWidget(m, "aves-richness.html")
 
+# publish richness at the aoi (bbox or poly)
+richness(inat, aoi, rank = "class", taxon = "Mammalia")
+m <- richness_map()
+htmlwidgets::saveWidget(m, "mammals-richness.html")
 
 
 ## UGH can't deal with antimeridian