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app.py
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@@ -24,40 +24,41 @@ st.markdown("""
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st.markdown("""
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# 📚 Clinical Terminology and Ontologies
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## Health Vocabularies, Systems of Coding, and Databases with Bibliographies
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__Keywords__:
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- Standardized nomenclature for clinical drugs developed by NLM
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- Provides links between drug names and related information such as ingredients, strengths, and dosages
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- **Data type: controlled vocabulary**
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- Access through **NLM's RxNorm website**: https://www.nlm.nih.gov/research/umls/rxnorm/index.html
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2. 2️⃣ Centers for Medicare and Medicaid Services' Healthcare Common Procedure Coding System (HCPCS):
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- Coding system used to identify healthcare **services, procedures, and supplies**
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- Includes **codes for drugs, biologicals, and other items** used in medical care
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- **Data type: coding system**
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- Access through **CMS website**: https://www.cms.gov/Medicare/Coding/MedHCPCSGenInfo
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3. 3️⃣ Unified Medical Language System (UMLS):
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- Set of files and software tools developed by NLM for integrating and mapping biomedical vocabularies
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- Includes RxNorm and other drug vocabularies, as well as other terminologies used in medicine
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- **Data type: controlled vocabulary**
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- Access through UMLS Metathesaurus: https://www.nlm.nih.gov/research/umls/index.html
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4. 4️⃣ PubMed:
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- Database of **biomedical literature** maintained by the National Center for Biotechnology Information (NCBI)
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- Includes information about **drugs, including drug names, chemical structures, and pharmacological actions**
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- **Data type: bibliographic database**
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- Access through **PubMed website**: https://pubmed.ncbi.nlm.nih.gov/
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5. 5️⃣ PubChem:
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- Database of chemical substances maintained by NCBI
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- Includes information about drugs, including **chemical structures, properties, and activities**
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- **Data type: chemical database**
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- Access through **PubChem website**: https://pubchem.ncbi.nlm.nih.gov/
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6. 6️⃣ Behavioral Health Code Terminology Sets:
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- Code terminology sets specific to behavioral health
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- Includes **DSM** published by American Psychiatric Association, **ICD** published by World Health Organization, and **CPT** published by American Medical Association
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- **Data type: coding system**
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@@ -65,7 +66,7 @@ __Keywords__:
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1. [DSM](https://www.psychiatry.org/psychiatrists/practice/dsm)
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2. [ICD](https://www.who.int/standards/classifications/classification-of-diseases)
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3. [CPT](https://www.ama-assn.org/practice-management/cpt/current-procedural-terminology-cpt)
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7. [Examples🩺⚕️NLP Clinical Ontology Biomedical NER](https://huggingface.co/spaces/awacke1/Biomed-NLP-AI-Clinical-Terminology)
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""")
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st.markdown("""
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@@ -73,7 +74,7 @@ st.markdown("""
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1. 🤔 **Sentiment analysis** - Determine underlying sentiment of text. [Example](https://huggingface.co/spaces/awacke1/Sentiment-analysis-streamlit)
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2. 📝 **Named Entity Recognition (NER)** - Identify and classify named entities in text. [Example](https://huggingface.co/spaces/awacke1/Named-entity-resolution)
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3. 🔊 **Speech recognition** - Transcribe spoken language into text.
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1. https://huggingface.co/spaces/awacke1/ASR-High-Accuracy-Test
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2. https://huggingface.co/spaces/awacke1/ASRGenerateStory
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3. https://huggingface.co/spaces/awacke1/TTS-STT-Blocks
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9. 💬 **Text generation** - Generate natural language text. [Example](https://huggingface.co/spaces/awacke1/Sentence2Paragraph)
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10. 🔎 **Topic modeling** - Automatically identify topics in a large corpus of text. [Example](https://huggingface.co/spaces/awacke1/Topic-modeling)
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- Examples
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1. NLP Video Summary
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2. TTS-STT ASR with Multiple Voices
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3. NLP Transcript with Video Player
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4. NLP Clinical Ontology Biomedical NER
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5. Document Understanding and NLP
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6. NLP ASR Wav2Vec2 Multilingual
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7. Live ASR
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8. NLP and Visualization
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""")
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st.markdown("""
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st.markdown("""
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# 📚 Clinical Terminology and Ontologies
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## Health Vocabularies, Systems of Coding, and Databases with Bibliographies
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##__Keywords__:
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1. __Clinical Terminology__: 💬 Words that doctors use to talk to each other about patients.
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2. __Ontologies for Medications and Conditions__: 📚 A fancy way of organizing knowledge about medicine and health problems.
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3. __Health Vocabularies__: 📝 A special list of words used in healthcare to talk about health issues.
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4. __Systems of Coding__: 💻 A way of giving things like sicknesses and treatments special codes, so that doctors can remember them easily.
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5. __Databases__: 🗄️ A computer system that stores information about patients, health research, and other healthcare things.
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6. __Bibliographies__: 📖 A list of books or articles that doctors use to learn about new health information.
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1. ## 1️⃣ National Library of Medicine's **RxNorm**:
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- Standardized nomenclature for clinical drugs developed by NLM
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- Provides links between drug names and related information such as ingredients, strengths, and dosages
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- **Data type: controlled vocabulary**
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- Access through **NLM's RxNorm website**: https://www.nlm.nih.gov/research/umls/rxnorm/index.html
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2. ## 2️⃣ Centers for Medicare and Medicaid Services' Healthcare Common Procedure Coding System (HCPCS):
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- Coding system used to identify healthcare **services, procedures, and supplies**
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- Includes **codes for drugs, biologicals, and other items** used in medical care
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- **Data type: coding system**
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- Access through **CMS website**: https://www.cms.gov/Medicare/Coding/MedHCPCSGenInfo
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3. ## 3️⃣ Unified Medical Language System (UMLS):
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- Set of files and software tools developed by NLM for integrating and mapping biomedical vocabularies
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- Includes RxNorm and other drug vocabularies, as well as other terminologies used in medicine
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- **Data type: controlled vocabulary**
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- Access through UMLS Metathesaurus: https://www.nlm.nih.gov/research/umls/index.html
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4. ## 4️⃣ PubMed:
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- Database of **biomedical literature** maintained by the National Center for Biotechnology Information (NCBI)
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- Includes information about **drugs, including drug names, chemical structures, and pharmacological actions**
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- **Data type: bibliographic database**
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- Access through **PubMed website**: https://pubmed.ncbi.nlm.nih.gov/
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5. ## 5️⃣ PubChem:
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- Database of chemical substances maintained by NCBI
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- Includes information about drugs, including **chemical structures, properties, and activities**
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- **Data type: chemical database**
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- Access through **PubChem website**: https://pubchem.ncbi.nlm.nih.gov/
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6. ## 6️⃣ Behavioral Health Code Terminology Sets:
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- Code terminology sets specific to behavioral health
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- Includes **DSM** published by American Psychiatric Association, **ICD** published by World Health Organization, and **CPT** published by American Medical Association
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- **Data type: coding system**
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1. [DSM](https://www.psychiatry.org/psychiatrists/practice/dsm)
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2. [ICD](https://www.who.int/standards/classifications/classification-of-diseases)
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3. [CPT](https://www.ama-assn.org/practice-management/cpt/current-procedural-terminology-cpt)
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7. ## [Examples🩺⚕️NLP Clinical Ontology Biomedical NER](https://huggingface.co/spaces/awacke1/Biomed-NLP-AI-Clinical-Terminology)
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""")
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st.markdown("""
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1. 🤔 **Sentiment analysis** - Determine underlying sentiment of text. [Example](https://huggingface.co/spaces/awacke1/Sentiment-analysis-streamlit)
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2. 📝 **Named Entity Recognition (NER)** - Identify and classify named entities in text. [Example](https://huggingface.co/spaces/awacke1/Named-entity-resolution)
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3. 🔊 **Speech recognition** - Transcribe spoken language into text.
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# Advanced NLP Examples:
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1. https://huggingface.co/spaces/awacke1/ASR-High-Accuracy-Test
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2. https://huggingface.co/spaces/awacke1/ASRGenerateStory
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3. https://huggingface.co/spaces/awacke1/TTS-STT-Blocks
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9. 💬 **Text generation** - Generate natural language text. [Example](https://huggingface.co/spaces/awacke1/Sentence2Paragraph)
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10. 🔎 **Topic modeling** - Automatically identify topics in a large corpus of text. [Example](https://huggingface.co/spaces/awacke1/Topic-modeling)
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- Examples
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1. [NLP Video Summary](https://huggingface.co/spaces/awacke1/Video-Summary)
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2. [TTS-STT ASR with Multiple Voices](https://huggingface.co/spaces/awacke1/TTS-STT-Blocks)
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3. [NLP Transcript with Video Player](https://huggingface.co/spaces/awacke1/Streamlit-ASR-Video)
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4. [NLP Clinical Ontology Biomedical NER](https://huggingface.co/spaces/awacke1/Biomed-NLP-AI-Clinical-Terminology)
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5. [Document Understanding and NLP](https://huggingface.co/spaces/awacke1/AIDocumentUnderstandingOCR)
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6. [NLP ASR Wav2Vec2 Multilingual](https://huggingface.co/spaces/awacke1/ASR-High-Accuracy-Test)
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7. [Live ASR](https://huggingface.co/spaces/awacke1/ASR-SOTA-NvidiaSTTMozilla)
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8. [NLP and Visualization](https://huggingface.co/spaces/awacke1/Visualization-Plotly-Sunbursts-Treemaps-and-WebGL)
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""")
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st.markdown("""
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