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Update app.py

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  1. app.py +25 -24
app.py CHANGED
@@ -24,40 +24,41 @@ st.markdown("""
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  st.markdown("""
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  # 📚 Clinical Terminology and Ontologies
26
  ## Health Vocabularies, Systems of Coding, and Databases with Bibliographies
27
- __Keywords__:
28
- - __Clinical Terminology__: 💬 Words that doctors use to talk to each other about patients.
29
- - __Ontologies for Medications and Conditions__: 📚 A fancy way of organizing knowledge about medicine and health problems.
30
- - __Health Vocabularies__: 📝 A special list of words used in healthcare to talk about health issues.
31
- - __Systems of Coding__: 💻 A way of giving things like sicknesses and treatments special codes, so that doctors can remember them easily.
32
- - __Databases__: 🗄️ A computer system that stores information about patients, health research, and other healthcare things.
33
- - __Bibliographies__: 📖 A list of books or articles that doctors use to learn about new health information.
34
-
35
- 1. 1️⃣ National Library of Medicine's **RxNorm**:
 
36
  - Standardized nomenclature for clinical drugs developed by NLM
37
  - Provides links between drug names and related information such as ingredients, strengths, and dosages
38
  - **Data type: controlled vocabulary**
39
  - Access through **NLM's RxNorm website**: https://www.nlm.nih.gov/research/umls/rxnorm/index.html
40
- 2. 2️⃣ Centers for Medicare and Medicaid Services' Healthcare Common Procedure Coding System (HCPCS):
41
  - Coding system used to identify healthcare **services, procedures, and supplies**
42
  - Includes **codes for drugs, biologicals, and other items** used in medical care
43
  - **Data type: coding system**
44
  - Access through **CMS website**: https://www.cms.gov/Medicare/Coding/MedHCPCSGenInfo
45
- 3. 3️⃣ Unified Medical Language System (UMLS):
46
  - Set of files and software tools developed by NLM for integrating and mapping biomedical vocabularies
47
  - Includes RxNorm and other drug vocabularies, as well as other terminologies used in medicine
48
  - **Data type: controlled vocabulary**
49
  - Access through UMLS Metathesaurus: https://www.nlm.nih.gov/research/umls/index.html
50
- 4. 4️⃣ PubMed:
51
  - Database of **biomedical literature** maintained by the National Center for Biotechnology Information (NCBI)
52
  - Includes information about **drugs, including drug names, chemical structures, and pharmacological actions**
53
  - **Data type: bibliographic database**
54
  - Access through **PubMed website**: https://pubmed.ncbi.nlm.nih.gov/
55
- 5. 5️⃣ PubChem:
56
  - Database of chemical substances maintained by NCBI
57
  - Includes information about drugs, including **chemical structures, properties, and activities**
58
  - **Data type: chemical database**
59
  - Access through **PubChem website**: https://pubchem.ncbi.nlm.nih.gov/
60
- 6. 6️⃣ Behavioral Health Code Terminology Sets:
61
  - Code terminology sets specific to behavioral health
62
  - Includes **DSM** published by American Psychiatric Association, **ICD** published by World Health Organization, and **CPT** published by American Medical Association
63
  - **Data type: coding system**
@@ -65,7 +66,7 @@ __Keywords__:
65
  1. [DSM](https://www.psychiatry.org/psychiatrists/practice/dsm)
66
  2. [ICD](https://www.who.int/standards/classifications/classification-of-diseases)
67
  3. [CPT](https://www.ama-assn.org/practice-management/cpt/current-procedural-terminology-cpt)
68
- 7. [Examples🩺⚕️NLP Clinical Ontology Biomedical NER](https://huggingface.co/spaces/awacke1/Biomed-NLP-AI-Clinical-Terminology)
69
  """)
70
 
71
  st.markdown("""
@@ -73,7 +74,7 @@ st.markdown("""
73
  1. 🤔 **Sentiment analysis** - Determine underlying sentiment of text. [Example](https://huggingface.co/spaces/awacke1/Sentiment-analysis-streamlit)
74
  2. 📝 **Named Entity Recognition (NER)** - Identify and classify named entities in text. [Example](https://huggingface.co/spaces/awacke1/Named-entity-resolution)
75
  3. 🔊 **Speech recognition** - Transcribe spoken language into text.
76
- - Examples
77
  1. https://huggingface.co/spaces/awacke1/ASR-High-Accuracy-Test
78
  2. https://huggingface.co/spaces/awacke1/ASRGenerateStory
79
  3. https://huggingface.co/spaces/awacke1/TTS-STT-Blocks
@@ -87,14 +88,14 @@ st.markdown("""
87
  9. 💬 **Text generation** - Generate natural language text. [Example](https://huggingface.co/spaces/awacke1/Sentence2Paragraph)
88
  10. 🔎 **Topic modeling** - Automatically identify topics in a large corpus of text. [Example](https://huggingface.co/spaces/awacke1/Topic-modeling)
89
  - Examples
90
- 1. NLP Video Summary: https://huggingface.co/spaces/awacke1/Video-Summary
91
- 2. TTS-STT ASR with Multiple Voices: https://huggingface.co/spaces/awacke1/TTS-STT-Blocks
92
- 3. NLP Transcript with Video Player: https://huggingface.co/spaces/awacke1/Streamlit-ASR-Video
93
- 4. NLP Clinical Ontology Biomedical NER: https://huggingface.co/spaces/awacke1/Biomed-NLP-AI-Clinical-Terminology
94
- 5. Document Understanding and NLP: https://huggingface.co/spaces/awacke1/AIDocumentUnderstandingOCR
95
- 6. NLP ASR Wav2Vec2 Multilingual: https://huggingface.co/spaces/awacke1/ASR-High-Accuracy-Test
96
- 7. Live ASR: https://huggingface.co/spaces/awacke1/ASR-SOTA-NvidiaSTTMozilla
97
- 8. NLP and Visualization: https://huggingface.co/spaces/awacke1/Visualization-Plotly-Sunbursts-Treemaps-and-WebGL
98
  """)
99
 
100
  st.markdown("""
 
24
  st.markdown("""
25
  # 📚 Clinical Terminology and Ontologies
26
  ## Health Vocabularies, Systems of Coding, and Databases with Bibliographies
27
+ ##__Keywords__:
28
+
29
+ 1. __Clinical Terminology__: 💬 Words that doctors use to talk to each other about patients.
30
+ 2. __Ontologies for Medications and Conditions__: 📚 A fancy way of organizing knowledge about medicine and health problems.
31
+ 3. __Health Vocabularies__: 📝 A special list of words used in healthcare to talk about health issues.
32
+ 4. __Systems of Coding__: 💻 A way of giving things like sicknesses and treatments special codes, so that doctors can remember them easily.
33
+ 5. __Databases__: 🗄️ A computer system that stores information about patients, health research, and other healthcare things.
34
+ 6. __Bibliographies__: 📖 A list of books or articles that doctors use to learn about new health information.
35
+
36
+ 1. ## 1️⃣ National Library of Medicine's **RxNorm**:
37
  - Standardized nomenclature for clinical drugs developed by NLM
38
  - Provides links between drug names and related information such as ingredients, strengths, and dosages
39
  - **Data type: controlled vocabulary**
40
  - Access through **NLM's RxNorm website**: https://www.nlm.nih.gov/research/umls/rxnorm/index.html
41
+ 2. ## 2️⃣ Centers for Medicare and Medicaid Services' Healthcare Common Procedure Coding System (HCPCS):
42
  - Coding system used to identify healthcare **services, procedures, and supplies**
43
  - Includes **codes for drugs, biologicals, and other items** used in medical care
44
  - **Data type: coding system**
45
  - Access through **CMS website**: https://www.cms.gov/Medicare/Coding/MedHCPCSGenInfo
46
+ 3. ## 3️⃣ Unified Medical Language System (UMLS):
47
  - Set of files and software tools developed by NLM for integrating and mapping biomedical vocabularies
48
  - Includes RxNorm and other drug vocabularies, as well as other terminologies used in medicine
49
  - **Data type: controlled vocabulary**
50
  - Access through UMLS Metathesaurus: https://www.nlm.nih.gov/research/umls/index.html
51
+ 4. ## 4️⃣ PubMed:
52
  - Database of **biomedical literature** maintained by the National Center for Biotechnology Information (NCBI)
53
  - Includes information about **drugs, including drug names, chemical structures, and pharmacological actions**
54
  - **Data type: bibliographic database**
55
  - Access through **PubMed website**: https://pubmed.ncbi.nlm.nih.gov/
56
+ 5. ## 5️⃣ PubChem:
57
  - Database of chemical substances maintained by NCBI
58
  - Includes information about drugs, including **chemical structures, properties, and activities**
59
  - **Data type: chemical database**
60
  - Access through **PubChem website**: https://pubchem.ncbi.nlm.nih.gov/
61
+ 6. ## 6️⃣ Behavioral Health Code Terminology Sets:
62
  - Code terminology sets specific to behavioral health
63
  - Includes **DSM** published by American Psychiatric Association, **ICD** published by World Health Organization, and **CPT** published by American Medical Association
64
  - **Data type: coding system**
 
66
  1. [DSM](https://www.psychiatry.org/psychiatrists/practice/dsm)
67
  2. [ICD](https://www.who.int/standards/classifications/classification-of-diseases)
68
  3. [CPT](https://www.ama-assn.org/practice-management/cpt/current-procedural-terminology-cpt)
69
+ 7. ## [Examples🩺⚕️NLP Clinical Ontology Biomedical NER](https://huggingface.co/spaces/awacke1/Biomed-NLP-AI-Clinical-Terminology)
70
  """)
71
 
72
  st.markdown("""
 
74
  1. 🤔 **Sentiment analysis** - Determine underlying sentiment of text. [Example](https://huggingface.co/spaces/awacke1/Sentiment-analysis-streamlit)
75
  2. 📝 **Named Entity Recognition (NER)** - Identify and classify named entities in text. [Example](https://huggingface.co/spaces/awacke1/Named-entity-resolution)
76
  3. 🔊 **Speech recognition** - Transcribe spoken language into text.
77
+ # Advanced NLP Examples:
78
  1. https://huggingface.co/spaces/awacke1/ASR-High-Accuracy-Test
79
  2. https://huggingface.co/spaces/awacke1/ASRGenerateStory
80
  3. https://huggingface.co/spaces/awacke1/TTS-STT-Blocks
 
88
  9. 💬 **Text generation** - Generate natural language text. [Example](https://huggingface.co/spaces/awacke1/Sentence2Paragraph)
89
  10. 🔎 **Topic modeling** - Automatically identify topics in a large corpus of text. [Example](https://huggingface.co/spaces/awacke1/Topic-modeling)
90
  - Examples
91
+ 1. [NLP Video Summary](https://huggingface.co/spaces/awacke1/Video-Summary)
92
+ 2. [TTS-STT ASR with Multiple Voices](https://huggingface.co/spaces/awacke1/TTS-STT-Blocks)
93
+ 3. [NLP Transcript with Video Player](https://huggingface.co/spaces/awacke1/Streamlit-ASR-Video)
94
+ 4. [NLP Clinical Ontology Biomedical NER](https://huggingface.co/spaces/awacke1/Biomed-NLP-AI-Clinical-Terminology)
95
+ 5. [Document Understanding and NLP](https://huggingface.co/spaces/awacke1/AIDocumentUnderstandingOCR)
96
+ 6. [NLP ASR Wav2Vec2 Multilingual](https://huggingface.co/spaces/awacke1/ASR-High-Accuracy-Test)
97
+ 7. [Live ASR](https://huggingface.co/spaces/awacke1/ASR-SOTA-NvidiaSTTMozilla)
98
+ 8. [NLP and Visualization](https://huggingface.co/spaces/awacke1/Visualization-Plotly-Sunbursts-Treemaps-and-WebGL)
99
  """)
100
 
101
  st.markdown("""