import argparse import logging import torch import torch.nn as nn from torch.autograd import Variable from torch.utils.data import DataLoader,Dataset import torchvision from autoencoder import AutoEncoder from AD_3DRandomPatch import AD_3DRandomPatch logging.basicConfig( format='%(asctime)s %(levelname)s: %(message)s', datefmt='%Y-%m-%d %H:%M:%S', level=logging.INFO) parser = argparse.ArgumentParser(description="Starter code for AutoEncoder") parser.add_argument("--learning_rate", "-lr", default=1e-3, type=float, help="Learning rate of the optimization. (default=0.01)") parser.add_argument('--momentum', default=0.9, type=float, metavar='M', help='momentum') parser.add_argument('--weight-decay', '--wd', default=1e-4, type=float, metavar='W', help='weight decay (default: 1e-4)') parser.add_argument("--batch_size", default=1, type=int, help="Batch size for training. (default=1)") parser.add_argument("--gpuid", default=[0], nargs='+', type=int, help="ID of gpu device to use. Empty implies cpu usage.") parser.add_argument("--num_classes", default=2, type=int, help="Number of classes.") parser.add_argument("--epochs", default=20, type=int, help="Epochs through the data. (default=20)") def main(options): if options.num_classes == 2: TRAINING_PATH = 'train_2classes.txt' else: TRAINING_PATH = 'train.txt' IMG_PATH = '/Users/waz/JHU/CV-ADNI/ImageNoSkull' dset_train = AD_3DRandomPatch(IMG_PATH, TRAINING_PATH) train_loader = DataLoader(dset_train, batch_size = options.batch_size, shuffle = True, num_workers = 4, drop_last = True ) sparsity = 0.05 beta = 0.5 mean_square_loss = nn.MSELoss() kl_div_loss = nn.KLDivLoss() use_gpu = len(options.gpuid)>=1 autoencoder = AutoEncoder() autoencoder = autoencoder.cpu() optimizer = torch.optim.Adam(autoencoder.parameters(), lr=options.learning_rate, weight_decay=options.weight_decay) train_loss = 0. for epoch in range(options.epochs): print("At {0}-th epoch.".format(epoch)) for i, patches in enumerate(train_loader): for b, batch in enumerate(patches): batch = Variable(batch) output, mean_activitaion = autoencoder(batch) loss1 = mean_square_loss(output, batch) loss2 = kl_div_loss(mean_activitaion, Variable(torch.Tensor([sparsity]))) print "loss1", loss1 print "loss2", loss2 loss = loss1 + loss2 train_loss += loss logging.info("batch {0} training loss is : {1:.5f}, {1:.5f}".format(b, loss1.data[0], loss2.data[0])) optimizer.zero_grad() loss.backward() optimizer.step() train_avg_loss = train_loss/len(train_loader*1000) print("Average training loss is {0:.5f} at the end of epoch {1}".format(train_avg_loss.data[0], epoch)) torch.save(model.state_dict(), open("autoencoder_model", 'wb')) if __name__ == "__main__": ret = parser.parse_known_args() options = ret[0] if ret[1]: logging.warning("unknown arguments: {0}".format(parser.parse_known_args()[1])) main(options)