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import gradio as gr | |
import pandas as pd | |
from rdkit import Chem | |
from rdkit.Chem import AllChem | |
import joblib | |
model = joblib.load('CHO.pkl') | |
def predict(smiles): | |
if smiles.strip() == "": | |
raise gr.Error("SMILES input error") | |
mol = Chem.MolFromSmiles(smiles) | |
if mol == None: | |
raise gr.Error("SMILES input error") | |
mol_ECFP4 = list(AllChem.GetMorganFingerprintAsBitVect(mol, 2, nBits=1024).ToBitString()) | |
preprocess_data = pd.DataFrame([mol_ECFP4]) | |
result = model.predict(preprocess_data) | |
postprocess_data = '{:.2e}'.format(pow(10, result[0])) | |
return postprocess_data | |
with gr.Blocks() as demo: | |
with gr.Row(): | |
with gr.Column(): | |
inputs=gr.Textbox(lines=2, label="Please enter SMILES for the compound") | |
with gr.Row(): | |
btn = gr.Button(variant="primary",value="submit") | |
clear_btn = gr.ClearButton(value="clear") | |
with gr.Column(): | |
outputs=gr.Textbox(lines=1, label="Predicted CHO cytotoxicity of the chemical is:",info="Unit: mol/L") | |
btn.click(predict, inputs=[inputs], outputs=[outputs]) | |
clear_btn.add([inputs,outputs]) | |
gr.Examples( | |
[["O=C(O)CBr"],["O=CC(Br)(Br)Br"],["IC(Br)Br"]], | |
[inputs], | |
) | |
demo.launch() |