Update app.py
Browse files
app.py
CHANGED
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@@ -674,24 +674,77 @@ with gr.Blocks(theme='ParityError/Interstellar') as demo:
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visible=True
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)
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with gr.TabItem("π§ͺ νμ΄λ‘ μ μ μ κ°ν"):
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gr.Markdown("""
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### β‘ κΈ°μ‘΄ νμ΄λ‘μ DNA νμ©
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κ°λ ₯ν νμ΄λ‘μ DNA μΌλΆλ₯Ό μλ‘μ΄ νμ΄λ‘μκ² μ΄μν©λλ€.
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""")
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pdb_id_code = gr.Textbox(
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label="νμ΄λ‘ DNA μ½λ",
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lines=1,
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placeholder='κΈ°μ‘΄ νμ΄λ‘μ DNA μ½λλ₯Ό μ
λ ₯νμΈμ (μ: 1DPX)'
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info="곡κ°λ νμ΄λ‘ DNA λ°μ΄ν°λ² μ΄μ€μμ μ½λλ₯Ό μ°Ύμ μ μμ΅λλ€"
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)
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contigs = gr.Textbox(
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label="μ΄μν DNA μμ",
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lines=1,
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placeholder='μμ: 15,A3-10,20-30'
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info="μ΄μνκ³ μΆμ DNA μμμ μ ννκ³ μλ‘μ΄ DNAλ₯Ό μΆκ°ν μ μμ΅λλ€"
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)
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with gr.Row():
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@@ -717,14 +770,12 @@ with gr.Blocks(theme='ParityError/Interstellar') as demo:
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""")
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with gr.Row():
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)
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label='κ°λ¬Έ νΉμ± λ°μ΄ν°'
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info="μ΄λ―Έ λΆμλ κ°λ¬Έ νΉμ± λ°μ΄ν°λ₯Ό κ°μ§κ³ μλ€λ©΄ μ
λ‘λνμΈμ"
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)
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pssm = gr.File(label='λΆμλ κ°λ¬Έ νΉμ±')
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pssm_view = gr.Plot(label='κ°λ¬Έ νΉμ± λΆμ κ²°κ³Ό')
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@@ -749,10 +800,6 @@ with gr.Blocks(theme='ParityError/Interstellar') as demo:
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gr.Markdown("#### π¬ DNA ꡬ쑰")
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output_viewer = gr.HTML()
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# μ΄λ²€νΈ μ°κ²° λΆλΆμ λμΌνκ² μ μ§
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# μ΄λ²€νΈ μ°κ²°
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preview_btn.click(get_motif_preview,[pdb_id_code, contigs],[preview_viewer, rewrite_pdb])
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pssm_gen_btn.click(get_pssm,[fasta_msa,input_pssm],[pssm_view, pssm])
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visible=True
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)
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# μλ―Έλ
Έμ° κ΅¬μ± μ€μ μΆκ°
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with gr.Accordion(label='𧬠DNA κ΅¬μ± μ€μ ', open=False):
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gr.Markdown("""
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νΉμ μλ―Έλ
Έμ°μ λΉμ¨μ μ‘°μ νμ¬ νμ΄λ‘μ νΉμ±μ κ°νν μ μμ΅λλ€.
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μμ: W0.2,E0.1 (νΈλ¦½ν ν 20%, κΈλ£¨νμ° 10%)
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""")
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with gr.Row():
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aa_bias = gr.Textbox(
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label="μλ―Έλ
Έμ° λΉμ¨",
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lines=1,
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placeholder='μμ: W0.2,E0.1'
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)
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aa_bias_potential = gr.Textbox(
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label="κ°ν μ λ",
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lines=1,
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placeholder='1.0-5.0 μ¬μ΄ κ° μ
λ ₯'
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)
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# νκ²½ μ μλ ₯ μ€μ μΆκ°
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with gr.Accordion(label='π νκ²½ μ μλ ₯ μ€μ ', open=False):
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gr.Markdown("""
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νμ΄λ‘μ νκ²½ μ μλ ₯μ μ‘°μ ν©λλ€.
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μμ: μμ€ νλμ νΉν, μμ: μ§μ νλμ νΉν
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""")
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with gr.Row():
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hydrophobic_target_score = gr.Textbox(
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label="νκ²½ μ μ μ μ",
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lines=1,
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placeholder='μμ: -5 (μμ€ νλμ νΉν)'
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)
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hydrophobic_potential = gr.Textbox(
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label="μ μλ ₯ κ°ν μ λ",
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lines=1,
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placeholder='1.0-2.0 μ¬μ΄ κ° μ
λ ₯'
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)
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# νμ° λ§€κ°λ³μ μ€μ
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with gr.Accordion(label='βοΈ κ³ κΈ μ€μ ', open=False):
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gr.Markdown("""
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DNA μμ± κ³Όμ μ μΈλΆ λ§€κ°λ³μλ₯Ό μ‘°μ ν©λλ€.
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""")
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with gr.Row():
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num_steps = gr.Textbox(
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label="μμ± λ¨κ³",
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lines=1,
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placeholder='25 μ΄ν κΆμ₯'
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)
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noise = gr.Dropdown(
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['normal','gmm2 [-1,1]','gmm3 [-1,0,1]'],
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label='λ
Έμ΄μ¦ νμ
',
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value='normal'
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)
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with gr.TabItem("π§ͺ νμ΄λ‘ μ μ μ κ°ν"):
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gr.Markdown("""
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### β‘ κΈ°μ‘΄ νμ΄λ‘μ DNA νμ©
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κ°λ ₯ν νμ΄λ‘μ DNA μΌλΆλ₯Ό μλ‘μ΄ νμ΄λ‘μκ² μ΄μν©λλ€.
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""")
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gr.Markdown("곡κ°λ νμ΄λ‘ DNA λ°μ΄ν°λ² μ΄μ€μμ μ½λλ₯Ό μ°Ύμ μ μμ΅λλ€")
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pdb_id_code = gr.Textbox(
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label="νμ΄λ‘ DNA μ½λ",
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lines=1,
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placeholder='κΈ°μ‘΄ νμ΄λ‘μ DNA μ½λλ₯Ό μ
λ ₯νμΈμ (μ: 1DPX)'
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)
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gr.Markdown("μ΄μνκ³ μΆμ DNA μμμ μ ννκ³ μλ‘μ΄ DNAλ₯Ό μΆκ°ν μ μμ΅λλ€")
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contigs = gr.Textbox(
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label="μ΄μν DNA μμ",
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lines=1,
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placeholder='μμ: 15,A3-10,20-30'
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)
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with gr.Row():
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""")
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with gr.Row():
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with gr.Column():
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gr.Markdown("νμ΄λ‘ κ°λ¬Έμ DNA μ λ³΄κ° λ΄κΈ΄ νμΌμ μ
λ‘λνμΈμ")
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fasta_msa = gr.File(label='κ°λ¬Έ DNA λ°μ΄ν°')
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with gr.Column():
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gr.Markdown("μ΄λ―Έ λΆμλ κ°λ¬Έ νΉμ± λ°μ΄ν°κ° μλ€λ©΄ μ
λ‘λνμΈμ")
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input_pssm = gr.File(label='κ°λ¬Έ νΉμ± λ°μ΄ν°')
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pssm = gr.File(label='λΆμλ κ°λ¬Έ νΉμ±')
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pssm_view = gr.Plot(label='κ°λ¬Έ νΉμ± λΆμ κ²°κ³Ό')
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gr.Markdown("#### π¬ DNA ꡬ쑰")
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output_viewer = gr.HTML()
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# μ΄λ²€νΈ μ°κ²°
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preview_btn.click(get_motif_preview,[pdb_id_code, contigs],[preview_viewer, rewrite_pdb])
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pssm_gen_btn.click(get_pssm,[fasta_msa,input_pssm],[pssm_view, pssm])
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