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Update app.py

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  1. app.py +63 -16
app.py CHANGED
@@ -674,24 +674,77 @@ with gr.Blocks(theme='ParityError/Interstellar') as demo:
674
  visible=True
675
  )
676
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
677
  with gr.TabItem("πŸ§ͺ νžˆμ–΄λ‘œ μœ μ „μž κ°•ν™”"):
678
  gr.Markdown("""
679
  ### ⚑ κΈ°μ‘΄ νžˆμ–΄λ‘œμ˜ DNA ν™œμš©
680
  κ°•λ ₯ν•œ νžˆμ–΄λ‘œμ˜ DNA 일뢀λ₯Ό μƒˆλ‘œμš΄ νžˆμ–΄λ‘œμ—κ²Œ μ΄μ‹ν•©λ‹ˆλ‹€.
681
  """)
682
 
 
683
  pdb_id_code = gr.Textbox(
684
  label="νžˆμ–΄λ‘œ DNA μ½”λ“œ",
685
  lines=1,
686
- placeholder='κΈ°μ‘΄ νžˆμ–΄λ‘œμ˜ DNA μ½”λ“œλ₯Ό μž…λ ₯ν•˜μ„Έμš” (예: 1DPX)',
687
- info="곡개된 νžˆμ–΄λ‘œ DNA λ°μ΄ν„°λ² μ΄μŠ€μ—μ„œ μ½”λ“œλ₯Ό 찾을 수 μžˆμŠ΅λ‹ˆλ‹€"
688
  )
689
 
 
690
  contigs = gr.Textbox(
691
  label="이식할 DNA μ˜μ—­",
692
  lines=1,
693
- placeholder='μ˜ˆμ‹œ: 15,A3-10,20-30',
694
- info="μ΄μ‹ν•˜κ³  싢은 DNA μ˜μ—­μ„ μ„ νƒν•˜κ³  μƒˆλ‘œμš΄ DNAλ₯Ό μΆ”κ°€ν•  수 μžˆμŠ΅λ‹ˆλ‹€"
695
  )
696
 
697
  with gr.Row():
@@ -717,14 +770,12 @@ with gr.Blocks(theme='ParityError/Interstellar') as demo:
717
  """)
718
 
719
  with gr.Row():
720
- fasta_msa = gr.File(
721
- label='κ°€λ¬Έ DNA 데이터',
722
- info="νžˆμ–΄λ‘œ κ°€λ¬Έμ˜ DNA 정보가 λ‹΄κΈ΄ νŒŒμΌμ„ μ—…λ‘œλ“œν•˜μ„Έμš”"
723
- )
724
- input_pssm = gr.File(
725
- label='κ°€λ¬Έ νŠΉμ„± 데이터',
726
- info="이미 λΆ„μ„λœ κ°€λ¬Έ νŠΉμ„± 데이터λ₯Ό κ°€μ§€κ³  μžˆλ‹€λ©΄ μ—…λ‘œλ“œν•˜μ„Έμš”"
727
- )
728
 
729
  pssm = gr.File(label='λΆ„μ„λœ κ°€λ¬Έ νŠΉμ„±')
730
  pssm_view = gr.Plot(label='κ°€λ¬Έ νŠΉμ„± 뢄석 κ²°κ³Ό')
@@ -749,10 +800,6 @@ with gr.Blocks(theme='ParityError/Interstellar') as demo:
749
  gr.Markdown("#### πŸ”¬ DNA ꡬ쑰")
750
  output_viewer = gr.HTML()
751
 
752
- # 이벀트 μ—°κ²° 뢀뢄은 λ™μΌν•˜κ²Œ μœ μ§€
753
-
754
-
755
-
756
  # 이벀트 μ—°κ²°
757
  preview_btn.click(get_motif_preview,[pdb_id_code, contigs],[preview_viewer, rewrite_pdb])
758
  pssm_gen_btn.click(get_pssm,[fasta_msa,input_pssm],[pssm_view, pssm])
 
674
  visible=True
675
  )
676
 
677
+ # μ•„λ―Έλ…Έμ‚° ꡬ성 μ„€μ • μΆ”κ°€
678
+ with gr.Accordion(label='🧬 DNA ꡬ성 μ„€μ •', open=False):
679
+ gr.Markdown("""
680
+ νŠΉμ • μ•„λ―Έλ…Έμ‚°μ˜ λΉ„μœ¨μ„ μ‘°μ ˆν•˜μ—¬ νžˆμ–΄λ‘œμ˜ νŠΉμ„±μ„ κ°•ν™”ν•  수 μžˆμŠ΅λ‹ˆλ‹€.
681
+ μ˜ˆμ‹œ: W0.2,E0.1 (νŠΈλ¦½ν† νŒ 20%, 글루탐산 10%)
682
+ """)
683
+ with gr.Row():
684
+ aa_bias = gr.Textbox(
685
+ label="μ•„λ―Έλ…Έμ‚° λΉ„μœ¨",
686
+ lines=1,
687
+ placeholder='μ˜ˆμ‹œ: W0.2,E0.1'
688
+ )
689
+ aa_bias_potential = gr.Textbox(
690
+ label="κ°•ν™” 정도",
691
+ lines=1,
692
+ placeholder='1.0-5.0 사이 κ°’ μž…λ ₯'
693
+ )
694
+
695
+ # ν™˜κ²½ 적응λ ₯ μ„€μ • μΆ”κ°€
696
+ with gr.Accordion(label='🌍 ν™˜κ²½ 적응λ ₯ μ„€μ •', open=False):
697
+ gr.Markdown("""
698
+ νžˆμ–΄λ‘œμ˜ ν™˜κ²½ 적응λ ₯을 μ‘°μ ˆν•©λ‹ˆλ‹€.
699
+ 음수: μˆ˜μ€‘ ν™œλ™μ— νŠΉν™”, μ–‘μˆ˜: 지상 ν™œλ™μ— νŠΉν™”
700
+ """)
701
+ with gr.Row():
702
+ hydrophobic_target_score = gr.Textbox(
703
+ label="ν™˜κ²½ 적응 점수",
704
+ lines=1,
705
+ placeholder='μ˜ˆμ‹œ: -5 (μˆ˜μ€‘ ν™œλ™μ— νŠΉν™”)'
706
+ )
707
+ hydrophobic_potential = gr.Textbox(
708
+ label="적응λ ₯ κ°•ν™” 정도",
709
+ lines=1,
710
+ placeholder='1.0-2.0 사이 κ°’ μž…λ ₯'
711
+ )
712
+
713
+ # ν™•μ‚° λ§€κ°œλ³€μˆ˜ μ„€μ •
714
+ with gr.Accordion(label='βš™οΈ κ³ κΈ‰ μ„€μ •', open=False):
715
+ gr.Markdown("""
716
+ DNA 생성 κ³Όμ •μ˜ μ„ΈλΆ€ λ§€κ°œλ³€μˆ˜λ₯Ό μ‘°μ •ν•©λ‹ˆλ‹€.
717
+ """)
718
+ with gr.Row():
719
+ num_steps = gr.Textbox(
720
+ label="생성 단계",
721
+ lines=1,
722
+ placeholder='25 μ΄ν•˜ ꢌμž₯'
723
+ )
724
+ noise = gr.Dropdown(
725
+ ['normal','gmm2 [-1,1]','gmm3 [-1,0,1]'],
726
+ label='λ…Έμ΄μ¦ˆ νƒ€μž…',
727
+ value='normal'
728
+ )
729
+
730
  with gr.TabItem("πŸ§ͺ νžˆμ–΄λ‘œ μœ μ „μž κ°•ν™”"):
731
  gr.Markdown("""
732
  ### ⚑ κΈ°μ‘΄ νžˆμ–΄λ‘œμ˜ DNA ν™œμš©
733
  κ°•λ ₯ν•œ νžˆμ–΄λ‘œμ˜ DNA 일뢀λ₯Ό μƒˆλ‘œμš΄ νžˆμ–΄λ‘œμ—κ²Œ μ΄μ‹ν•©λ‹ˆλ‹€.
734
  """)
735
 
736
+ gr.Markdown("곡개된 νžˆμ–΄λ‘œ DNA λ°μ΄ν„°λ² μ΄μŠ€μ—μ„œ μ½”λ“œλ₯Ό 찾을 수 μžˆμŠ΅λ‹ˆλ‹€")
737
  pdb_id_code = gr.Textbox(
738
  label="νžˆμ–΄λ‘œ DNA μ½”λ“œ",
739
  lines=1,
740
+ placeholder='κΈ°μ‘΄ νžˆμ–΄λ‘œμ˜ DNA μ½”λ“œλ₯Ό μž…λ ₯ν•˜μ„Έμš” (예: 1DPX)'
 
741
  )
742
 
743
+ gr.Markdown("μ΄μ‹ν•˜κ³  싢은 DNA μ˜μ—­μ„ μ„ νƒν•˜κ³  μƒˆλ‘œμš΄ DNAλ₯Ό μΆ”κ°€ν•  수 μžˆμŠ΅λ‹ˆλ‹€")
744
  contigs = gr.Textbox(
745
  label="이식할 DNA μ˜μ—­",
746
  lines=1,
747
+ placeholder='μ˜ˆμ‹œ: 15,A3-10,20-30'
 
748
  )
749
 
750
  with gr.Row():
 
770
  """)
771
 
772
  with gr.Row():
773
+ with gr.Column():
774
+ gr.Markdown("νžˆμ–΄λ‘œ κ°€λ¬Έμ˜ DNA 정보가 λ‹΄κΈ΄ νŒŒμΌμ„ μ—…λ‘œλ“œν•˜μ„Έμš”")
775
+ fasta_msa = gr.File(label='κ°€λ¬Έ DNA 데이터')
776
+ with gr.Column():
777
+ gr.Markdown("이미 λΆ„μ„λœ κ°€λ¬Έ νŠΉμ„± 데이터가 μžˆλ‹€λ©΄ μ—…λ‘œλ“œν•˜μ„Έμš”")
778
+ input_pssm = gr.File(label='κ°€λ¬Έ νŠΉμ„± 데이터')
 
 
779
 
780
  pssm = gr.File(label='λΆ„μ„λœ κ°€λ¬Έ νŠΉμ„±')
781
  pssm_view = gr.Plot(label='κ°€λ¬Έ νŠΉμ„± 뢄석 κ²°κ³Ό')
 
800
  gr.Markdown("#### πŸ”¬ DNA ꡬ쑰")
801
  output_viewer = gr.HTML()
802
 
 
 
 
 
803
  # 이벀트 μ—°κ²°
804
  preview_btn.click(get_motif_preview,[pdb_id_code, contigs],[preview_viewer, rewrite_pdb])
805
  pssm_gen_btn.click(get_pssm,[fasta_msa,input_pssm],[pssm_view, pssm])