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80521da
cambios interfaz
Browse files- app.py +52 -29
- requirements.txt +1 -1
app.py
CHANGED
@@ -51,11 +51,14 @@ def load_img(file):
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return sitk, mri_image
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def show_img(img, mri_slice):
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fig = plt.figure()
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plt.imshow(img[mri_slice,:,:], cmap='gray')
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# def show_brain(brain, brain_slice):
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# fig = plt.figure()
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@@ -63,13 +66,15 @@ def show_img(img, mri_slice):
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# return fig, gr.update(visible=True)
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def process_img(img, brain_slice):
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with tf.device("cpu:0"):
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brain = utils.brain_stripping(img, model_unet)
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fig,
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return brain, fig,
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def clear():
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return gr.File.update(value=None), gr.Plot.update(value=None), gr.update(visible=False)
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@@ -82,15 +87,9 @@ def clear():
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# # outputs='text'
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# )
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theme = gr.themes.Base(
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css="""
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() => {
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document.body.classList.toggle('dark', shouldAdd);
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}
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"""
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with gr.Blocks(theme=
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with gr.Row():
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# gr.HTML(r"""<center><img src='https://user-images.githubusercontent.com/66338785/233529518-33e8bcdb-146f-49e8-94c4-27d6529ce4f7.png' width="30%" height="30%"></center>""")
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gr.HTML(r"""<center><img src='https://user-images.githubusercontent.com/66338785/233531457-f368e04b-5099-42a8-906d-6f1250ea0f1e.png' width="40%" height="40%"></center>""")
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@@ -101,22 +100,40 @@ with gr.Blocks(theme="base", css=css) as demo:
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# Inputs
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with gr.Row():
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with gr.Column(scale=1):
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with gr.Tab("Personal data"):
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# Objeto para subir archivo nifti
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input_name = gr.Textbox(placeholder='
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input_sex = gr.Dropdown(["Male", "Female"], label="Sex")
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input_age = gr.Number(label='Age')
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with gr.Tab("Clinical data"):
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input_MMSE = gr.Number(label='MMSE')
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input_GDSCALE = gr.Number(label='GDSCALE')
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input_CDR = gr.Number(label='Global CDR')
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input_FAQ = gr.Number(label='FAQ Total Score')
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input_NPI_Q = gr.Number(label='NPI-Q Total Score')
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input_file = gr.File(file_count="single", file_type=[".nii"], label="Archivo Imagen MRI")
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with gr.Row():
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# Bot贸n para cargar imagen
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load_img_button = gr.Button(value="Load")
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@@ -125,10 +142,12 @@ with gr.Blocks(theme="base", css=css) as demo:
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clear_button = gr.Button(value="Clear")
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# Bot贸n para procesar imagen
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process_button = gr.Button(value="Procesar")
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# Outputs
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with gr.Column(scale=1):
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# Plot para im谩gen original
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plot_img_original = gr.Plot(label="Imagen MRI original")
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@@ -141,7 +160,7 @@ with gr.Blocks(theme="base", css=css) as demo:
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visible=False)
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# Plot para im谩gen procesada
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plot_brain = gr.Plot(label="Imagen MRI procesada")
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# Slider para im谩gen procesada
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brain_slider = gr.Slider(minimum=0,
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@@ -158,16 +177,19 @@ with gr.Blocks(theme="base", css=css) as demo:
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original_input_img = gr.State()
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brain_img = gr.State()
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# Cambios
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# Cargar imagen nueva
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input_file.change(load_img,
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input_file,
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[original_input_sitk, original_input_img]
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# Mostrar imagen nueva
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load_img_button.click(show_img,
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[original_input_img, mri_slider],
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[plot_img_original, mri_slider])
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# Limpiar campos
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clear_button.click(fn=clear,
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@@ -175,8 +197,8 @@ with gr.Blocks(theme="base", css=css) as demo:
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# Actualizar imagen original
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mri_slider.change(show_img,
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[original_input_img, mri_slider],
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[plot_img_original
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# Procesar imagen
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process_button.click(fn=process_img,
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@@ -185,11 +207,12 @@ with gr.Blocks(theme="base", css=css) as demo:
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# Actualizar imagen procesada
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brain_slider.change(show_img,
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[brain_img, brain_slider],
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[plot_brain
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if __name__ == "__main__":
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demo.launch()
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# # Visualizaci贸n resultados
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return sitk, mri_image
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def show_img(img, mri_slice, update):
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fig = plt.figure()
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plt.imshow(img[mri_slice,:,:], cmap='gray')
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if update == True:
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return fig, gr.update(visible=True), gr.update(visible=True)
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else:
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return fig
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# def show_brain(brain, brain_slice):
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# fig = plt.figure()
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# return fig, gr.update(visible=True)
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def process_img(img, brain_slice, progress=gr.Progress()):
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progress(880,desc="Processing...")
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with tf.device("cpu:0"):
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brain = utils.brain_stripping(img, model_unet)
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fig, update_slider, _ = show_img(brain, brain_slice, update=True)
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return brain, fig, update_slider
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def clear():
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return gr.File.update(value=None), gr.Plot.update(value=None), gr.update(visible=False)
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# # outputs='text'
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# )
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# theme = gr.themes.Base().load('css_new.json')
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with gr.Blocks(theme=gr.themes.Base()) as demo:
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with gr.Row():
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# gr.HTML(r"""<center><img src='https://user-images.githubusercontent.com/66338785/233529518-33e8bcdb-146f-49e8-94c4-27d6529ce4f7.png' width="30%" height="30%"></center>""")
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gr.HTML(r"""<center><img src='https://user-images.githubusercontent.com/66338785/233531457-f368e04b-5099-42a8-906d-6f1250ea0f1e.png' width="40%" height="40%"></center>""")
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# Inputs
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with gr.Row():
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with gr.Column(variant="panel", scale=1):
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gr.Markdown('<h2 style="text-align: center; color:#235784;">Patient Information</h2>')
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with gr.Tab("Personal data"):
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# Objeto para subir archivo nifti
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input_name = gr.Textbox(placeholder='Enter the patient name', label='Patient name')
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input_age = gr.Number(label='Age')
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input_phone_num = gr.Number(label='Phone number')
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input_emer_name = gr.Textbox(placeholder='Enter the emergency contact name', label='Emergency contact name')
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input_emer_phone_num = gr.Number(label='Emergency contact name phone number')
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input_sex = gr.Dropdown(["Male", "Female"], label="Sex")
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with gr.Tab("Clinical data"):
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input_MMSE = gr.Number(label='MMSE')
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input_GDSCALE = gr.Number(label='GDSCALE')
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input_CDR = gr.Number(label='Global CDR')
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input_FAQ = gr.Number(label='FAQ Total Score')
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input_NPI_Q = gr.Number(label='NPI-Q Total Score')
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with gr.Tab("Vital Signs"):
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input_Diastolic_blood_pressure = gr.Number(label='Diastolic Blood Pressure(mm Hg)')
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input_Systolic_blood_pressure = gr.Number(label='Systolic Blood Pressure(mm Hg)')
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input_Body_heigth = gr.Number(label='Body heigth (cm)')
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input_Body_weight = gr.Number(label='Body weigth (kg)')
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input_Heart_rate = gr.Number(label='Heart rate (bpm)')
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input_Respiratory_rate = gr.Number(label='Respiratory rate (bpm)')
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input_Body_temperature = gr.Number(label='Body temperature (掳C)')
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input_Pluse_oximetry = gr.Number(label='Pluse oximetry (%)')
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with gr.Tab("Medications"):
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input_medications = gr.Textbox(label='Medications', lines=5)
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input_allergies = gr.Textbox(label='Allergies', lines=5)
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input_file = gr.File(file_count="single", label="MRI Image File (.nii)")
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with gr.Row():
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# Bot贸n para cargar imagen
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load_img_button = gr.Button(value="Load")
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clear_button = gr.Button(value="Clear")
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# Bot贸n para procesar imagen
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process_button = gr.Button(value="Procesar", visible=False)
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# Outputs
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with gr.Column(variant="panel", scale=1):
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gr.Markdown('<h2 style="text-align: center; color:#235784;">MRI visualization</h2>')
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# Plot para im谩gen original
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plot_img_original = gr.Plot(label="Imagen MRI original")
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visible=False)
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# Plot para im谩gen procesada
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plot_brain = gr.Plot(label="Imagen MRI procesada", visible=True)
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# Slider para im谩gen procesada
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brain_slider = gr.Slider(minimum=0,
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original_input_img = gr.State()
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brain_img = gr.State()
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update_true = gr.State(True)
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update_false = gr.State(False)
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# Cambios
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# Cargar imagen nueva
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input_file.change(load_img,
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input_file,
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[original_input_sitk, original_input_img])
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# Mostrar imagen nueva
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load_img_button.click(show_img,
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[original_input_img, mri_slider, update_true],
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[plot_img_original, mri_slider, process_button])
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# Limpiar campos
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clear_button.click(fn=clear,
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# Actualizar imagen original
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mri_slider.change(show_img,
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[original_input_img, mri_slider, update_false],
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[plot_img_original])
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# Procesar imagen
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process_button.click(fn=process_img,
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# Actualizar imagen procesada
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brain_slider.change(show_img,
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[brain_img, brain_slider, update_false],
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[plot_brain])
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if __name__ == "__main__":
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demo.queue(concurrency_count=20)
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demo.launch()
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# # Visualizaci贸n resultados
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requirements.txt
CHANGED
@@ -1,4 +1,4 @@
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gradio==3.
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keras==2.10.0
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matplotlib==3.5.2
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numpy==1.21.5
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gradio==3.28.3
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keras==2.10.0
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matplotlib==3.5.2
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numpy==1.21.5
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