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scvi-tools
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tabula-sapiens-muscle-scvi

TensorBoard
scvi-tools
biology
genomics
single-cell
model_cls_name:SCVI
scvi_version:1.2.0
anndata_version:0.11.1
modality:rna
tissue:various
annotated:True
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@@ -51,10 +51,10 @@ space might still be useful for analysis.
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  | Metric | Training Value | Validation Value |
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  |-------------------------|----------------|------------------|
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- | Mean Absolute Error | 1.40 | 1.48 |
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- | Pearson Correlation | 0.75 | 0.74 |
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- | Spearman Correlation | 0.71 | 0.70 |
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- | R² (R-Squared) | 0.37 | 0.30 |
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  The gene-wise coefficient of variation summarizes how well variation between different genes is
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  preserved by the generated model expression. This value is usually quite high.
@@ -63,7 +63,7 @@ preserved by the generated model expression. This value is usually quite high.
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  | Metric | Training Value |
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  |-------------------------|----------------|
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- | Mean Absolute Error | 18.24 |
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  | Pearson Correlation | 0.65 |
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  | Spearman Correlation | 0.74 |
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  | R² (R-Squared) | 0.01 |
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  | Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |
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  | --- | --- | --- | --- | --- | --- | --- | --- |
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- | mesenchymal stem cell | 0.95 | 0.67 | 0.86 | 0.94 | 0.38 | 0.84 | 14148.00 |
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- | skeletal muscle satellite stem cell | 0.91 | 1.30 | 0.65 | 0.89 | 0.34 | 0.77 | 4831.00 |
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- | endothelial cell of vascular tree | 0.94 | 1.58 | 0.64 | 0.88 | 0.32 | 0.78 | 3602.00 |
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- | capillary endothelial cell | 0.89 | 2.18 | 0.63 | 0.80 | 0.32 | 0.75 | 2015.00 |
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- | macrophage | 0.77 | 2.06 | 0.69 | 0.88 | 0.35 | 0.81 | 1989.00 |
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- | pericyte | 0.92 | 2.09 | 0.68 | 0.85 | 0.34 | 0.74 | 1794.00 |
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- | CD8-positive, alpha-beta T cell | 0.70 | 4.48 | 0.62 | 0.76 | 0.23 | 0.78 | 536.00 |
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- | T cell | 0.88 | 4.94 | 0.52 | 0.60 | 0.32 | 0.76 | 407.00 |
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- | fast muscle cell | 0.87 | 4.78 | 0.62 | 0.60 | 0.27 | 0.89 | 266.00 |
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- | tendon cell | 0.70 | 4.77 | 0.53 | 0.57 | 0.36 | 0.66 | 234.00 |
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- | CD4-positive, alpha-beta T cell | 0.81 | 5.02 | 0.62 | 0.70 | 0.26 | 0.72 | 221.00 |
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- | slow muscle cell | 0.84 | 4.50 | 0.63 | 0.61 | 0.24 | 0.86 | 163.00 |
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- | mature NK T cell | 0.75 | 5.37 | 0.64 | 0.71 | 0.25 | 0.72 | 137.00 |
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- | endothelial cell of lymphatic vessel | 0.67 | 5.03 | 0.56 | 0.57 | 0.31 | 0.63 | 134.00 |
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- | endothelial cell of artery | 0.77 | 4.45 | 0.62 | 0.61 | 0.38 | 0.74 | 133.00 |
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- | smooth muscle cell | 0.69 | 5.21 | 0.58 | 0.55 | 0.35 | 0.75 | 58.00 |
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- | mast cell | 0.63 | 6.51 | 0.51 | 0.50 | 0.26 | 0.77 | 46.00 |
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- | erythrocyte | 0.19 | 4.68 | 0.32 | 0.41 | 0.55 | 0.97 | 20.00 |
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- | mesothelial cell | 0.36 | 6.47 | 0.42 | 0.33 | 0.40 | 0.73 | 12.00 |
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  </details>
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  | Metric | Training Value | Validation Value |
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  |-------------------------|----------------|------------------|
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+ | Mean Absolute Error | 1.40 | 1.47 |
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+ | Pearson Correlation | 0.76 | 0.75 |
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+ | Spearman Correlation | 0.71 | 0.71 |
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+ | R² (R-Squared) | 0.37 | 0.33 |
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  The gene-wise coefficient of variation summarizes how well variation between different genes is
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  preserved by the generated model expression. This value is usually quite high.
 
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  | Metric | Training Value |
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  |-------------------------|----------------|
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+ | Mean Absolute Error | 18.53 |
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  | Pearson Correlation | 0.65 |
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  | Spearman Correlation | 0.74 |
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  | R² (R-Squared) | 0.01 |
 
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  | Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |
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  | --- | --- | --- | --- | --- | --- | --- | --- |
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+ | mesenchymal stem cell | 0.94 | 0.71 | 0.82 | 0.94 | 0.38 | 0.84 | 14148.00 |
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+ | skeletal muscle satellite stem cell | 0.93 | 1.36 | 0.64 | 0.87 | 0.34 | 0.77 | 4831.00 |
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+ | endothelial cell of vascular tree | 0.94 | 1.55 | 0.65 | 0.89 | 0.32 | 0.78 | 3602.00 |
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+ | capillary endothelial cell | 0.90 | 2.21 | 0.63 | 0.79 | 0.32 | 0.75 | 2015.00 |
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+ | macrophage | 0.77 | 2.00 | 0.71 | 0.89 | 0.34 | 0.81 | 1989.00 |
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+ | pericyte | 0.90 | 2.03 | 0.69 | 0.84 | 0.34 | 0.74 | 1794.00 |
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+ | CD8-positive, alpha-beta T cell | 0.70 | 4.47 | 0.63 | 0.77 | 0.23 | 0.78 | 536.00 |
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+ | T cell | 0.87 | 4.81 | 0.54 | 0.61 | 0.31 | 0.76 | 407.00 |
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+ | fast muscle cell | 0.88 | 4.94 | 0.60 | 0.58 | 0.28 | 0.89 | 266.00 |
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+ | tendon cell | 0.71 | 4.70 | 0.54 | 0.57 | 0.36 | 0.66 | 234.00 |
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+ | CD4-positive, alpha-beta T cell | 0.80 | 5.22 | 0.59 | 0.69 | 0.27 | 0.72 | 221.00 |
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+ | slow muscle cell | 0.85 | 4.40 | 0.64 | 0.62 | 0.26 | 0.87 | 163.00 |
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+ | mature NK T cell | 0.73 | 5.31 | 0.65 | 0.71 | 0.25 | 0.72 | 137.00 |
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+ | endothelial cell of lymphatic vessel | 0.68 | 4.96 | 0.57 | 0.58 | 0.31 | 0.63 | 134.00 |
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+ | endothelial cell of artery | 0.75 | 4.49 | 0.61 | 0.60 | 0.38 | 0.74 | 133.00 |
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+ | smooth muscle cell | 0.71 | 5.16 | 0.58 | 0.56 | 0.34 | 0.75 | 58.00 |
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+ | mast cell | 0.63 | 6.53 | 0.50 | 0.48 | 0.27 | 0.77 | 46.00 |
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+ | erythrocyte | 0.22 | 4.84 | 0.32 | 0.39 | 0.54 | 0.97 | 20.00 |
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+ | mesothelial cell | 0.31 | 6.47 | 0.41 | 0.32 | 0.39 | 0.73 | 12.00 |
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  </details>
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