Upload README.md with huggingface_hub

README.md

@@ -51,10 +51,10 @@ space might still be useful for analysis.
 
 | Metric                  | Training Value | Validation Value |
 |-------------------------|----------------|------------------|
-| Mean Absolute Error | 2.41  | 2.31           |
-| Pearson Correlation | 0.46  | 0.43  |
-| Spearman Correlation | 0.34 | 0.37  |
-| R² (R-Squared) | -0.25  | -0.32      |
+| Mean Absolute Error | 2.28  | 2.45           |
+| Pearson Correlation | 0.46  | 0.36  |
+| Spearman Correlation | 0.40 | 0.27  |
+| R² (R-Squared) | -0.35  | -0.49      |
 
 The gene-wise coefficient of variation summarizes how well variation between different genes is
 preserved by the generated model expression. This value is usually quite high.
@@ -63,10 +63,10 @@ preserved by the generated model expression. This value is usually quite high.
 
 | Metric                  | Training Value |
 |-------------------------|----------------|
-| Mean Absolute Error | 8.86   |
-| Pearson Correlation | 0.53  |
+| Mean Absolute Error | 8.84   |
+| Pearson Correlation | 0.54  |
 | Spearman Correlation | 0.54 |
-| R² (R-Squared) | -1.31  |
+| R² (R-Squared) | -1.36  |
 
 </details>
 
@@ -83,18 +83,18 @@ cell-type.
 
 | Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |
 | --- | --- | --- | --- | --- | --- | --- | --- |
-| macrophage | 0.90 | 1.29 | 0.55 | 0.92 | 0.27 | 0.76 | 1379.00 |
-| monocyte | 0.83 | 2.14 | 0.55 | 0.82 | 0.25 | 0.68 | 605.00 |
-| endothelial cell of hepatic sinusoid | 0.73 | 1.91 | 0.61 | 0.88 | 0.54 | 0.81 | 341.00 |
-| mature NK T cell | 0.80 | 3.16 | 0.57 | 0.85 | 0.48 | 0.83 | 231.00 |
-| neutrophil | 0.38 | 4.44 | 0.43 | 0.67 | 0.21 | 0.52 | 81.00 |
-| fibroblast | 0.69 | 2.92 | 0.63 | 0.81 | 0.54 | 0.77 | 70.00 |
-| hepatocyte | 0.66 | 4.54 | 0.59 | 0.82 | 0.41 | 0.82 | 67.00 |
-| liver dendritic cell | 0.46 | 5.48 | 0.52 | 0.44 | 0.35 | 0.47 | 34.00 |
-| T cell | 0.42 | 8.60 | 0.36 | 0.47 | 0.32 | 0.48 | 20.00 |
-| plasma cell | 0.45 | 7.03 | 0.49 | 0.45 | 0.34 | 0.55 | 19.00 |
-| intrahepatic cholangiocyte | 0.51 | 5.22 | 0.61 | 0.73 | 0.40 | 0.58 | 11.00 |
-| erythrocyte | 0.23 | 9.99 | 0.29 | 0.23 | 0.26 | 0.81 | 2.00 |
+| macrophage | 0.91 | 1.32 | 0.54 | 0.92 | 0.27 | 0.76 | 1379.00 |
+| monocyte | 0.85 | 2.17 | 0.55 | 0.83 | 0.25 | 0.68 | 605.00 |
+| endothelial cell of hepatic sinusoid | 0.74 | 1.88 | 0.63 | 0.87 | 0.55 | 0.82 | 341.00 |
+| mature NK T cell | 0.80 | 3.23 | 0.55 | 0.84 | 0.48 | 0.83 | 231.00 |
+| neutrophil | 0.37 | 4.49 | 0.42 | 0.67 | 0.21 | 0.52 | 81.00 |
+| fibroblast | 0.67 | 2.83 | 0.64 | 0.83 | 0.54 | 0.77 | 70.00 |
+| hepatocyte | 0.68 | 4.37 | 0.61 | 0.82 | 0.41 | 0.82 | 67.00 |
+| liver dendritic cell | 0.44 | 5.47 | 0.52 | 0.46 | 0.35 | 0.47 | 34.00 |
+| T cell | 0.46 | 8.49 | 0.37 | 0.46 | 0.32 | 0.48 | 20.00 |
+| plasma cell | 0.50 | 7.16 | 0.47 | 0.44 | 0.34 | 0.56 | 19.00 |
+| intrahepatic cholangiocyte | 0.52 | 5.43 | 0.59 | 0.73 | 0.40 | 0.57 | 11.00 |
+| erythrocyte | 0.19 | 10.19 | 0.26 | 0.19 | 0.27 | 0.81 | 2.00 |
 
 </details>
 
@@ -186,7 +186,7 @@ scvi-tools documentation for details. -->
 If provided by the original uploader, for those interested in understanding or replicating the
 training process, the code is available at the link below.
 
-**Training Code URL**: Not provided by uploader
+**Training Code URL**: https://github.com/YosefLab/scvi-hub-models/blob/main/src/scvi_hub_models/TS_train_all_tissues.ipynb
 
 </details>