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@@ -33,3 +33,4 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
 *.zip filter=lfs diff=lfs merge=lfs -text
 *.zst filter=lfs diff=lfs merge=lfs -text
 *tfevents* filter=lfs diff=lfs merge=lfs -text
+OnClass.data-00000-of-00001 filter=lfs diff=lfs merge=lfs -text

OnClass.data-00000-of-00001

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OnClass.npz

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accuracies.json

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+{
+    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| fibroblast | 680 | 0.97 | 0.74 | 0.97 | 0.90 | 0.00 | 0.88 | 0.93 | 0.94 | 0.97 |\n| endothelial cell | 421 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.98 | 0.99 | 0.99 | 0.99 |\n| vascular associated smooth muscle cell | 375 | 0.67 | 0.29 | 0.81 | 0.73 | 0.00 | 0.58 | 0.64 | 0.66 | 0.75 |\n| epithelial cell of uterus | 158 | 0.98 | 0.97 | 0.98 | 0.96 | 0.00 | 0.98 | 0.98 | 0.97 | 0.98 |\n| CD8-positive, alpha-beta T cell | 125 | 0.85 | 0.84 | 0.88 | 0.78 | 0.00 | 0.81 | 0.81 | 0.82 | 0.89 |\n| pericyte | 101 | 0.44 | 0.24 | 0.31 | 0.31 | 0.00 | 0.40 | 0.40 | 0.39 | 0.43 |\n| macrophage | 94 | 0.98 | 0.94 | 0.96 | 0.96 | 0.00 | 0.94 | 0.97 | 0.96 | 0.98 |\n| myometrial cell | 87 | 0.83 | 0.00 | 0.84 | 0.57 | 0.00 | 0.75 | 0.70 | 0.74 | 0.84 |\n| CD4-positive, alpha-beta T cell | 51 | 0.80 | 0.75 | 0.84 | 0.47 | 0.00 | 0.87 | 0.82 | 0.85 | 0.84 |\n| ciliated epithelial cell | 31 | 0.97 | 0.87 | 0.97 | 0.83 | 0.00 | 0.97 | 0.98 | 1.00 | 0.97 |\n| mature NK T cell | 25 | 0.69 | 0.62 | 0.75 | 0.72 | 0.00 | 0.67 | 0.74 | 0.51 | 0.79 |\n| neutrophil | 11 | 0.85 | 0.91 | 0.82 | 0.86 | 0.00 | 0.69 | 0.96 | 0.95 | 0.88 |\n| myofibroblast cell | 18 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.16 | 0.17 | 0.21 | 0.00 |\n| natural killer cell | 5 | 0.00 | 0.00 | 0.29 | 0.00 | 0.00 | 0.33 | 0.13 | 0.13 | 0.00 |\n| mast cell | 6 | 0.92 | 0.83 | 0.91 | 0.86 | 0.00 | 0.92 | 0.92 | 0.92 | 0.92 |\n| B cell | 5 | 0.67 | 0.80 | 0.80 | 0.89 | 0.00 | 1.00 | 1.00 | 0.91 | 1.00 |\n| T cell | 4 | 0.00 | 0.00 | 0.33 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| monocyte | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| plasma cell | 2 | 0.00 | 0.00 | 0.80 | 0.67 | 0.00 | 0.80 | 1.00 | 1.00 | 1.00 |\n| skeletal muscle satellite stem cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| endothelial cell of lymphatic vessel | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| innate lymphoid cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| intermediate monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| adventitial cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| myeloid dendritic cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| epithelial fate stem cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| regulatory T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
+    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| fibroblast | 5913 | 0.96 | 0.70 | 0.98 | 0.94 | 0.00 | 0.89 | 0.95 | 0.96 | 0.98 |\n| endothelial cell | 4276 | 0.99 | 0.98 | 0.99 | 0.99 | 0.00 | 0.98 | 0.99 | 0.99 | 1.00 |\n| vascular associated smooth muscle cell | 3220 | 0.64 | 0.07 | 0.86 | 0.83 | 0.00 | 0.63 | 0.70 | 0.73 | 0.80 |\n| epithelial cell of uterus | 1259 | 0.97 | 0.94 | 0.99 | 0.97 | 0.00 | 0.98 | 0.98 | 0.98 | 0.99 |\n| CD8-positive, alpha-beta T cell | 1216 | 0.85 | 0.84 | 0.90 | 0.85 | 0.00 | 0.89 | 0.93 | 0.95 | 0.94 |\n| pericyte | 932 | 0.45 | 0.20 | 0.51 | 0.51 | 0.00 | 0.47 | 0.56 | 0.56 | 0.62 |\n| macrophage | 835 | 0.96 | 0.94 | 0.97 | 0.96 | 0.00 | 0.96 | 0.98 | 0.98 | 0.97 |\n| myometrial cell | 830 | 0.83 | 0.00 | 0.88 | 0.69 | 0.00 | 0.79 | 0.79 | 0.87 | 0.89 |\n| CD4-positive, alpha-beta T cell | 387 | 0.73 | 0.69 | 0.83 | 0.68 | 0.00 | 0.84 | 0.91 | 0.93 | 0.90 |\n| ciliated epithelial cell | 289 | 0.95 | 0.86 | 0.99 | 0.91 | 0.00 | 0.95 | 0.99 | 0.99 | 0.99 |\n| mature NK T cell | 182 | 0.66 | 0.44 | 0.77 | 0.74 | 0.00 | 0.81 | 0.84 | 0.90 | 0.88 |\n| neutrophil | 92 | 0.88 | 0.90 | 0.95 | 0.89 | 0.00 | 0.76 | 0.99 | 0.97 | 0.97 |\n| myofibroblast cell | 83 | 0.00 | 0.00 | 0.17 | 0.16 | 0.00 | 0.21 | 0.39 | 0.52 | 0.37 |\n| natural killer cell | 87 | 0.00 | 0.02 | 0.39 | 0.46 | 0.00 | 0.66 | 0.89 | 0.87 | 0.72 |\n| mast cell | 59 | 0.94 | 0.96 | 0.97 | 0.90 | 0.00 | 0.97 | 0.98 | 0.94 | 0.98 |\n| B cell | 45 | 0.78 | 0.84 | 0.97 | 0.84 | 0.00 | 0.93 | 0.99 | 1.00 | 0.99 |\n| T cell | 43 | 0.00 | 0.00 | 0.24 | 0.04 | 0.00 | 0.62 | 0.91 | 0.98 | 0.85 |\n| monocyte | 20 | 0.00 | 0.00 | 0.52 | 0.16 | 0.00 | 0.79 | 0.98 | 0.98 | 0.60 |\n| plasma cell | 17 | 0.00 | 0.00 | 0.97 | 0.64 | 0.00 | 0.72 | 1.00 | 1.00 | 1.00 |\n| skeletal muscle satellite stem cell | 17 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.20 | 0.89 | 0.97 | 1.00 |\n| endothelial cell of lymphatic vessel | 6 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.29 | 1.00 | 0.92 | 0.29 |\n| innate lymphoid cell | 4 | 0.00 | 0.00 | 0.00 | 0.67 | 0.00 | 0.89 | 1.00 | 1.00 | 1.00 |\n| intermediate monocyte | 5 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.67 | 1.00 | 1.00 | 0.00 |\n| adventitial cell | 4 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.19 | 0.38 | 0.73 | 0.00 |\n| myeloid dendritic cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.44 | 1.00 | 1.00 | 0.00 |\n| epithelial fate stem cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| regulatory T cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.18 | 1.00 | 1.00 | 0.00 |"
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celltypist.pkl

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checkpoint

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pynndescent_index.joblib

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scanvi/model.pt

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scvi/model.pt

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