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@@ -33,3 +33,4 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
 *.zip filter=lfs diff=lfs merge=lfs -text
 *.zst filter=lfs diff=lfs merge=lfs -text
 *tfevents* filter=lfs diff=lfs merge=lfs -text
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OnClass.data-00000-of-00001

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OnClass.npz

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accuracies.json

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+{
+    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| fibroblast | 8247 | 0.81 | 0.78 | 0.88 | 0.68 | 0.00 | 0.68 | 0.70 | 0.74 | 0.88 |\n| stromal cell of ovary | 3511 | 0.98 | 0.94 | 0.89 | 0.62 | 0.00 | 0.56 | 0.97 | 0.97 | 0.99 |\n| mesenchymal stem cell | 2267 | 0.94 | 0.74 | 0.88 | 0.36 | 0.00 | 0.37 | 0.89 | 0.89 | 0.96 |\n| smooth muscle cell | 1815 | 0.77 | 0.65 | 0.85 | 0.69 | 0.00 | 0.64 | 0.76 | 0.80 | 0.84 |\n| pericyte | 1110 | 0.73 | 0.63 | 0.82 | 0.63 | 0.00 | 0.61 | 0.71 | 0.73 | 0.78 |\n| skeletal muscle satellite stem cell | 669 | 0.96 | 0.95 | 0.96 | 0.81 | 0.00 | 0.81 | 0.95 | 0.95 | 0.97 |\n| blood vessel smooth muscle cell | 580 | 0.82 | 0.44 | 0.92 | 0.65 | 0.00 | 0.82 | 0.88 | 0.86 | 0.93 |\n| regular atrial cardiac myocyte | 621 | 0.80 | 0.43 | 0.73 | 0.30 | 0.00 | 0.70 | 0.87 | 0.93 | 0.92 |\n| fibroblast of breast | 541 | 0.96 | 0.00 | 0.71 | 0.08 | 0.00 | 0.01 | 0.93 | 0.81 | 0.89 |\n| vascular associated smooth muscle cell | 477 | 0.70 | 0.03 | 0.64 | 0.41 | 0.00 | 0.45 | 0.62 | 0.70 | 0.72 |\n| myofibroblast cell | 430 | 0.61 | 0.27 | 0.82 | 0.40 | 0.00 | 0.33 | 0.57 | 0.64 | 0.78 |\n| thymic fibroblast type 2 | 400 | 0.72 | 0.00 | 0.43 | 0.06 | 0.00 | 0.01 | 0.64 | 0.67 | 0.44 |\n| mesenchymal stem cell of adipose tissue | 356 | 0.33 | 0.00 | 0.65 | 0.26 | 0.00 | 0.18 | 0.34 | 0.38 | 0.49 |\n| stromal cell | 289 | 0.82 | 0.02 | 0.50 | 0.12 | 0.00 | 0.31 | 0.78 | 0.81 | 0.91 |\n| thymic fibroblast type 1 | 337 | 0.64 | 0.02 | 0.61 | 0.09 | 0.00 | 0.03 | 0.56 | 0.53 | 0.58 |\n| ventricular cardiac muscle cell | 245 | 0.45 | 0.13 | 0.60 | 0.40 | 0.00 | 0.31 | 0.73 | 0.85 | 0.78 |\n| fibroblast of cardiac tissue | 186 | 0.92 | 0.53 | 0.92 | 0.06 | 0.00 | 0.24 | 0.78 | 0.74 | 0.93 |\n| alveolar adventitial fibroblast | 125 | 0.78 | 0.32 | 0.66 | 0.12 | 0.00 | 0.05 | 0.60 | 0.81 | 0.75 |\n| adventitial cell | 106 | 0.22 | 0.00 | 0.13 | 0.10 | 0.00 | 0.13 | 0.31 | 0.43 | 0.45 |\n| theca cell | 120 | 0.87 | 0.00 | 0.86 | 0.67 | 0.00 | 0.65 | 0.78 | 0.74 | 0.90 |\n| keratocyte | 92 | 0.55 | 0.00 | 0.37 | 0.02 | 0.00 | 0.11 | 0.39 | 0.46 | 0.52 |\n| myometrial cell | 101 | 0.76 | 0.00 | 0.89 | 0.14 | 0.00 | 0.41 | 0.66 | 0.71 | 0.88 |\n| mural cell | 56 | 0.65 | 0.53 | 0.76 | 0.16 | 0.00 | 0.16 | 0.52 | 0.56 | 0.86 |\n| Mueller cell | 50 | 0.97 | 0.75 | 0.94 | 0.79 | 0.00 | 0.77 | 0.96 | 0.96 | 0.99 |\n| fast muscle cell | 53 | 0.78 | 0.67 | 0.78 | 0.71 | 0.00 | 0.72 | 0.78 | 0.85 | 0.90 |\n| pancreatic stellate cell | 38 | 0.66 | 0.00 | 0.51 | 0.14 | 0.00 | 0.00 | 0.77 | 0.75 | 0.74 |\n| tendon cell | 40 | 0.52 | 0.05 | 0.52 | 0.11 | 0.00 | 0.22 | 0.45 | 0.37 | 0.70 |\n| muscle cell | 37 | 0.80 | 0.00 | 0.71 | 0.69 | 0.00 | 0.65 | 0.96 | 0.90 | 0.97 |\n| Schwann cell | 25 | 0.80 | 0.76 | 0.83 | 0.80 | 0.00 | 0.49 | 0.79 | 0.67 | 0.85 |\n| melanocyte | 15 | 0.73 | 0.67 | 0.69 | 0.62 | 0.00 | 0.26 | 0.68 | 0.70 | 0.94 |\n| hepatic stellate cell | 28 | 0.71 | 0.00 | 0.67 | 0.15 | 0.00 | 0.15 | 0.79 | 0.84 | 0.78 |\n| bronchial smooth muscle cell | 12 | 0.22 | 0.00 | 0.00 | 0.00 | 0.00 | 0.05 | 0.16 | 0.30 | 0.34 |\n| tongue muscle cell | 12 | 0.74 | 0.15 | 0.67 | 0.12 | 0.00 | 0.42 | 0.55 | 0.32 | 0.74 |\n| slow muscle cell | 14 | 0.67 | 0.65 | 0.67 | 0.43 | 0.00 | 0.60 | 0.87 | 0.90 | 0.93 |\n| connective tissue cell | 9 | 0.00 | 0.00 | 0.00 | 0.11 | 0.00 | 0.00 | 0.24 | 0.17 | 0.15 |\n| adipocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| glial cell | 1 | 0.00 | 0.00 | 1.00 | 0.50 | 0.00 | 0.04 | 0.25 | 0.15 | 0.67 |\n| Leydig cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| mesenchymal cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
+    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| fibroblast | 74895 | 0.81 | 0.70 | 0.93 | 0.76 | 0.00 | 0.87 | 0.70 | 0.74 | 0.92 |\n| stromal cell of ovary | 31492 | 0.98 | 0.38 | 0.91 | 0.68 | 0.00 | 0.97 | 0.97 | 0.97 | 0.99 |\n| mesenchymal stem cell | 21229 | 0.94 | 0.59 | 0.94 | 0.53 | 0.00 | 0.94 | 0.89 | 0.90 | 0.97 |\n| smooth muscle cell | 16574 | 0.76 | 0.59 | 0.92 | 0.79 | 0.00 | 0.82 | 0.77 | 0.81 | 0.88 |\n| pericyte | 9768 | 0.71 | 0.52 | 0.90 | 0.75 | 0.00 | 0.79 | 0.72 | 0.75 | 0.83 |\n| skeletal muscle satellite stem cell | 5499 | 0.96 | 0.93 | 0.98 | 0.87 | 0.00 | 0.95 | 0.95 | 0.96 | 0.98 |\n| blood vessel smooth muscle cell | 5407 | 0.82 | 0.11 | 0.96 | 0.79 | 0.00 | 0.96 | 0.88 | 0.88 | 0.96 |\n| regular atrial cardiac myocyte | 5190 | 0.78 | 0.10 | 0.90 | 0.77 | 0.00 | 0.99 | 0.89 | 0.94 | 0.96 |\n| fibroblast of breast | 4729 | 0.97 | 0.00 | 0.76 | 0.31 | 0.00 | 0.98 | 0.92 | 0.81 | 0.99 |\n| vascular associated smooth muscle cell | 4541 | 0.69 | 0.01 | 0.80 | 0.58 | 0.00 | 0.70 | 0.67 | 0.72 | 0.79 |\n| myofibroblast cell | 4004 | 0.61 | 0.07 | 0.90 | 0.60 | 0.00 | 0.64 | 0.60 | 0.66 | 0.84 |\n| thymic fibroblast type 2 | 3803 | 0.72 | 0.00 | 0.67 | 0.26 | 0.00 | 0.89 | 0.66 | 0.68 | 0.89 |\n| mesenchymal stem cell of adipose tissue | 3416 | 0.37 | 0.00 | 0.77 | 0.47 | 0.00 | 0.48 | 0.37 | 0.42 | 0.53 |\n| stromal cell | 3139 | 0.83 | 0.00 | 0.70 | 0.36 | 0.00 | 0.85 | 0.81 | 0.83 | 0.94 |\n| thymic fibroblast type 1 | 2932 | 0.60 | 0.00 | 0.79 | 0.26 | 0.00 | 0.87 | 0.58 | 0.54 | 0.87 |\n| ventricular cardiac muscle cell | 2353 | 0.45 | 0.00 | 0.79 | 0.75 | 0.00 | 0.98 | 0.79 | 0.88 | 0.92 |\n| fibroblast of cardiac tissue | 1751 | 0.92 | 0.27 | 0.98 | 0.40 | 0.00 | 0.80 | 0.77 | 0.72 | 0.94 |\n| alveolar adventitial fibroblast | 986 | 0.81 | 0.16 | 0.74 | 0.29 | 0.00 | 0.84 | 0.59 | 0.85 | 0.94 |\n| adventitial cell | 938 | 0.23 | 0.00 | 0.63 | 0.26 | 0.00 | 0.57 | 0.29 | 0.42 | 0.67 |\n| theca cell | 918 | 0.83 | 0.00 | 0.92 | 0.79 | 0.00 | 0.60 | 0.73 | 0.69 | 0.87 |\n| keratocyte | 882 | 0.57 | 0.01 | 0.54 | 0.16 | 0.00 | 0.50 | 0.39 | 0.47 | 0.74 |\n| myometrial cell | 816 | 0.71 | 0.00 | 0.87 | 0.57 | 0.00 | 0.68 | 0.65 | 0.71 | 0.83 |\n| mural cell | 558 | 0.64 | 0.40 | 0.84 | 0.38 | 0.00 | 0.85 | 0.54 | 0.57 | 0.95 |\n| Mueller cell | 445 | 0.97 | 0.38 | 0.96 | 0.87 | 0.00 | 0.89 | 0.98 | 0.97 | 0.98 |\n| fast muscle cell | 442 | 0.81 | 0.65 | 0.90 | 0.82 | 0.00 | 0.87 | 0.83 | 0.93 | 0.94 |\n| pancreatic stellate cell | 386 | 0.57 | 0.00 | 0.84 | 0.29 | 0.00 | 0.70 | 0.79 | 0.76 | 0.79 |\n| tendon cell | 380 | 0.53 | 0.01 | 0.80 | 0.48 | 0.00 | 0.32 | 0.49 | 0.39 | 0.77 |\n| muscle cell | 369 | 0.79 | 0.00 | 0.90 | 0.89 | 0.00 | 0.94 | 0.99 | 1.00 | 0.99 |\n| Schwann cell | 287 | 0.68 | 0.40 | 0.87 | 0.77 | 0.00 | 0.62 | 0.87 | 0.83 | 0.92 |\n| melanocyte | 216 | 0.60 | 0.57 | 0.92 | 0.68 | 0.00 | 0.50 | 0.75 | 0.79 | 0.96 |\n| hepatic stellate cell | 194 | 0.64 | 0.00 | 0.80 | 0.45 | 0.00 | 0.75 | 0.71 | 0.74 | 0.82 |\n| bronchial smooth muscle cell | 207 | 0.39 | 0.00 | 0.59 | 0.31 | 0.00 | 0.49 | 0.38 | 0.52 | 0.71 |\n| tongue muscle cell | 186 | 0.71 | 0.03 | 0.87 | 0.36 | 0.00 | 0.88 | 0.80 | 0.50 | 0.94 |\n| slow muscle cell | 160 | 0.66 | 0.49 | 0.82 | 0.63 | 0.00 | 0.90 | 0.95 | 0.96 | 0.96 |\n| connective tissue cell | 142 | 0.00 | 0.00 | 0.55 | 0.18 | 0.00 | 0.62 | 0.37 | 0.29 | 0.78 |\n| adipocyte | 33 | 0.50 | 0.00 | 0.96 | 0.55 | 0.00 | 0.57 | 0.90 | 0.96 | 0.96 |\n| glial cell | 19 | 0.00 | 0.00 | 0.76 | 0.47 | 0.00 | 0.11 | 0.33 | 0.21 | 0.70 |\n| Leydig cell | 9 | 0.00 | 0.00 | 0.00 | 0.22 | 0.00 | 0.14 | 0.72 | 0.27 | 0.82 |\n| mesenchymal cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.12 | 0.40 | 0.67 | 0.67 |"
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