Upload README.md with huggingface_hub
Browse files
README.md
CHANGED
@@ -32,43 +32,43 @@ computed on a 10% random subset of the data that was not used for training.
|
|
32 |
|
33 |
| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
|
34 |
| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
|
35 |
-
| fibroblast |
|
36 |
-
| stromal cell of ovary |
|
37 |
-
| mesenchymal stem cell | 2266 | 0.93 | 0.
|
38 |
-
| smooth muscle cell | 1815 | 0.
|
39 |
-
| pericyte |
|
40 |
-
| skeletal muscle satellite stem cell |
|
41 |
-
| blood vessel smooth muscle cell |
|
42 |
-
| regular atrial cardiac myocyte |
|
43 |
-
| fibroblast of breast | 541 | 0.
|
44 |
-
| vascular associated smooth muscle cell |
|
45 |
-
| myofibroblast cell |
|
46 |
-
| thymic fibroblast type 2 |
|
47 |
-
| mesenchymal stem cell of adipose tissue |
|
48 |
-
| stromal cell |
|
49 |
-
| thymic fibroblast type 1 |
|
50 |
-
| ventricular cardiac muscle cell |
|
51 |
-
| fibroblast of cardiac tissue | 186 | 0.96 | 0.
|
52 |
-
| alveolar adventitial fibroblast |
|
53 |
-
| adventitial cell |
|
54 |
-
| theca cell |
|
55 |
-
| keratocyte |
|
56 |
-
| myometrial cell |
|
57 |
-
| mural cell |
|
58 |
-
| Mueller cell | 50 | 0.
|
59 |
-
| fast muscle cell |
|
60 |
-
| pancreatic stellate cell | 38 | 0.
|
61 |
-
| tendon cell | 40 | 0.
|
62 |
-
| muscle cell |
|
63 |
-
| Schwann cell |
|
64 |
-
| melanocyte |
|
65 |
-
| hepatic stellate cell | 29 | 0.
|
66 |
-
| bronchial smooth muscle cell |
|
67 |
-
| tongue muscle cell | 11 | 0.
|
68 |
-
| slow muscle cell | 14 | 0.
|
69 |
-
| connective tissue cell | 9 | 0.00 | 0.00 | 0.00 | 0.
|
70 |
| adipocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
|
71 |
-
| glial cell | 1 | 0.00 | 0.00 | 1.00 |
|
72 |
| Leydig cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
|
73 |
| mesenchymal cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
|
74 |
|
@@ -76,45 +76,45 @@ The train accuracies are computed on the training data.
|
|
76 |
|
77 |
| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
|
78 |
| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
|
79 |
-
| fibroblast |
|
80 |
-
| stromal cell of ovary |
|
81 |
-
| mesenchymal stem cell | 21230 | 0.93 | 0.61 | 0.94 | 0.
|
82 |
-
| smooth muscle cell | 16574 | 0.
|
83 |
-
| pericyte |
|
84 |
-
| skeletal muscle satellite stem cell |
|
85 |
-
| blood vessel smooth muscle cell |
|
86 |
-
| regular atrial cardiac myocyte |
|
87 |
-
| fibroblast of breast | 4729 | 0.
|
88 |
-
| vascular associated smooth muscle cell |
|
89 |
-
| myofibroblast cell |
|
90 |
-
| thymic fibroblast type 2 |
|
91 |
-
| mesenchymal stem cell of adipose tissue |
|
92 |
-
| stromal cell |
|
93 |
-
| thymic fibroblast type 1 |
|
94 |
-
| ventricular cardiac muscle cell |
|
95 |
-
| fibroblast of cardiac tissue | 1751 | 0.
|
96 |
-
| alveolar adventitial fibroblast |
|
97 |
-
| adventitial cell |
|
98 |
-
| theca cell |
|
99 |
-
| keratocyte |
|
100 |
-
| myometrial cell |
|
101 |
-
| mural cell |
|
102 |
-
| Mueller cell | 445 | 0.
|
103 |
-
| fast muscle cell |
|
104 |
-
| pancreatic stellate cell |
|
105 |
-
| tendon cell | 380 | 0.
|
106 |
-
| muscle cell |
|
107 |
-
| Schwann cell |
|
108 |
-
| melanocyte |
|
109 |
-
| hepatic stellate cell | 193 | 0.
|
110 |
-
| bronchial smooth muscle cell |
|
111 |
-
| tongue muscle cell | 187 | 0.
|
112 |
-
| slow muscle cell | 160 | 0.
|
113 |
-
| connective tissue cell | 142 | 0.00 | 0.00 | 0.
|
114 |
-
| adipocyte | 33 | 0.
|
115 |
-
| glial cell | 19 | 0.00 | 0.00 | 0.
|
116 |
-
| Leydig cell | 9 | 0.00 | 0.00 | 0.00 | 0.
|
117 |
-
| mesenchymal cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.
|
118 |
|
119 |
</details>
|
120 |
|
|
|
32 |
|
33 |
| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
|
34 |
| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
|
35 |
+
| fibroblast | 8260 | 0.82 | 0.79 | 0.88 | 0.69 | 0.00 | 0.61 | 0.70 | 0.73 | 0.89 |
|
36 |
+
| stromal cell of ovary | 3509 | 0.97 | 0.94 | 0.89 | 0.60 | 0.00 | 0.50 | 0.96 | 0.96 | 0.99 |
|
37 |
+
| mesenchymal stem cell | 2266 | 0.93 | 0.75 | 0.88 | 0.33 | 0.00 | 0.40 | 0.90 | 0.89 | 0.95 |
|
38 |
+
| smooth muscle cell | 1815 | 0.79 | 0.66 | 0.85 | 0.70 | 0.00 | 0.64 | 0.77 | 0.81 | 0.83 |
|
39 |
+
| pericyte | 1105 | 0.72 | 0.63 | 0.83 | 0.66 | 0.00 | 0.49 | 0.71 | 0.74 | 0.78 |
|
40 |
+
| skeletal muscle satellite stem cell | 670 | 0.95 | 0.95 | 0.96 | 0.76 | 0.00 | 0.70 | 0.95 | 0.96 | 0.97 |
|
41 |
+
| blood vessel smooth muscle cell | 580 | 0.88 | 0.49 | 0.92 | 0.67 | 0.00 | 0.43 | 0.88 | 0.86 | 0.95 |
|
42 |
+
| regular atrial cardiac myocyte | 621 | 0.80 | 0.43 | 0.74 | 0.30 | 0.00 | 0.10 | 0.90 | 0.94 | 0.92 |
|
43 |
+
| fibroblast of breast | 541 | 0.97 | 0.00 | 0.71 | 0.14 | 0.00 | 0.10 | 0.90 | 0.80 | 0.93 |
|
44 |
+
| vascular associated smooth muscle cell | 474 | 0.72 | 0.04 | 0.62 | 0.48 | 0.00 | 0.19 | 0.64 | 0.73 | 0.73 |
|
45 |
+
| myofibroblast cell | 414 | 0.56 | 0.29 | 0.80 | 0.39 | 0.00 | 0.44 | 0.56 | 0.60 | 0.77 |
|
46 |
+
| thymic fibroblast type 2 | 401 | 0.69 | 0.00 | 0.43 | 0.07 | 0.00 | 0.23 | 0.61 | 0.65 | 0.54 |
|
47 |
+
| mesenchymal stem cell of adipose tissue | 359 | 0.35 | 0.00 | 0.64 | 0.27 | 0.00 | 0.22 | 0.34 | 0.38 | 0.50 |
|
48 |
+
| stromal cell | 289 | 0.79 | 0.02 | 0.49 | 0.30 | 0.00 | 0.37 | 0.75 | 0.80 | 0.94 |
|
49 |
+
| thymic fibroblast type 1 | 339 | 0.66 | 0.01 | 0.60 | 0.17 | 0.00 | 0.12 | 0.57 | 0.55 | 0.63 |
|
50 |
+
| ventricular cardiac muscle cell | 245 | 0.45 | 0.11 | 0.61 | 0.38 | 0.00 | 0.47 | 0.79 | 0.86 | 0.80 |
|
51 |
+
| fibroblast of cardiac tissue | 186 | 0.96 | 0.54 | 0.92 | 0.07 | 0.00 | 0.48 | 0.81 | 0.75 | 0.95 |
|
52 |
+
| alveolar adventitial fibroblast | 124 | 0.80 | 0.40 | 0.63 | 0.14 | 0.00 | 0.32 | 0.57 | 0.80 | 0.79 |
|
53 |
+
| adventitial cell | 106 | 0.25 | 0.00 | 0.13 | 0.07 | 0.00 | 0.11 | 0.30 | 0.46 | 0.51 |
|
54 |
+
| theca cell | 120 | 0.69 | 0.27 | 0.88 | 0.61 | 0.00 | 0.63 | 0.81 | 0.68 | 0.88 |
|
55 |
+
| keratocyte | 91 | 0.58 | 0.04 | 0.36 | 0.05 | 0.00 | 0.10 | 0.41 | 0.44 | 0.58 |
|
56 |
+
| myometrial cell | 101 | 0.87 | 0.00 | 0.88 | 0.16 | 0.00 | 0.36 | 0.64 | 0.72 | 0.87 |
|
57 |
+
| mural cell | 57 | 0.57 | 0.54 | 0.76 | 0.27 | 0.00 | 0.27 | 0.53 | 0.55 | 0.88 |
|
58 |
+
| Mueller cell | 50 | 0.92 | 0.63 | 0.97 | 0.72 | 0.00 | 0.59 | 0.97 | 0.97 | 0.98 |
|
59 |
+
| fast muscle cell | 53 | 0.63 | 0.70 | 0.83 | 0.72 | 0.00 | 0.85 | 0.83 | 0.88 | 0.91 |
|
60 |
+
| pancreatic stellate cell | 38 | 0.43 | 0.00 | 0.52 | 0.16 | 0.00 | 0.00 | 0.80 | 0.81 | 0.73 |
|
61 |
+
| tendon cell | 40 | 0.28 | 0.14 | 0.52 | 0.11 | 0.00 | 0.11 | 0.31 | 0.39 | 0.64 |
|
62 |
+
| muscle cell | 36 | 0.78 | 0.00 | 0.69 | 0.63 | 0.00 | 0.73 | 0.92 | 0.96 | 0.96 |
|
63 |
+
| Schwann cell | 33 | 0.71 | 0.75 | 0.79 | 0.72 | 0.00 | 0.20 | 0.70 | 0.74 | 0.82 |
|
64 |
+
| melanocyte | 16 | 0.00 | 0.67 | 0.79 | 0.71 | 0.00 | 0.20 | 0.71 | 0.70 | 0.91 |
|
65 |
+
| hepatic stellate cell | 29 | 0.24 | 0.00 | 0.70 | 0.19 | 0.00 | 0.16 | 0.84 | 0.84 | 0.71 |
|
66 |
+
| bronchial smooth muscle cell | 12 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.12 | 0.20 | 0.28 | 0.29 |
|
67 |
+
| tongue muscle cell | 11 | 0.00 | 0.43 | 0.67 | 0.13 | 0.00 | 0.10 | 0.59 | 0.33 | 0.71 |
|
68 |
+
| slow muscle cell | 14 | 0.00 | 0.55 | 0.67 | 0.20 | 0.00 | 0.83 | 0.87 | 0.87 | 0.90 |
|
69 |
+
| connective tissue cell | 9 | 0.00 | 0.00 | 0.00 | 0.12 | 0.00 | 0.02 | 0.33 | 0.22 | 0.40 |
|
70 |
| adipocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
|
71 |
+
| glial cell | 1 | 0.00 | 0.00 | 1.00 | 1.00 | 0.00 | 0.29 | 0.40 | 0.11 | 1.00 |
|
72 |
| Leydig cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
|
73 |
| mesenchymal cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
|
74 |
|
|
|
76 |
|
77 |
| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
|
78 |
| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
|
79 |
+
| fibroblast | 74880 | 0.82 | 0.71 | 0.93 | 0.77 | 0.00 | 0.84 | 0.70 | 0.73 | 0.92 |
|
80 |
+
| stromal cell of ovary | 31494 | 0.97 | 0.45 | 0.91 | 0.73 | 0.00 | 0.96 | 0.96 | 0.96 | 0.99 |
|
81 |
+
| mesenchymal stem cell | 21230 | 0.93 | 0.61 | 0.94 | 0.51 | 0.00 | 0.93 | 0.90 | 0.90 | 0.97 |
|
82 |
+
| smooth muscle cell | 16574 | 0.79 | 0.59 | 0.92 | 0.79 | 0.00 | 0.86 | 0.78 | 0.81 | 0.89 |
|
83 |
+
| pericyte | 9773 | 0.71 | 0.52 | 0.90 | 0.76 | 0.00 | 0.75 | 0.72 | 0.76 | 0.83 |
|
84 |
+
| skeletal muscle satellite stem cell | 5498 | 0.94 | 0.93 | 0.98 | 0.85 | 0.00 | 0.95 | 0.96 | 0.95 | 0.98 |
|
85 |
+
| blood vessel smooth muscle cell | 5407 | 0.89 | 0.13 | 0.96 | 0.77 | 0.00 | 0.94 | 0.88 | 0.87 | 0.96 |
|
86 |
+
| regular atrial cardiac myocyte | 5190 | 0.78 | 0.12 | 0.90 | 0.76 | 0.00 | 0.98 | 0.91 | 0.95 | 0.97 |
|
87 |
+
| fibroblast of breast | 4729 | 0.98 | 0.00 | 0.76 | 0.38 | 0.00 | 0.95 | 0.90 | 0.78 | 0.99 |
|
88 |
+
| vascular associated smooth muscle cell | 4544 | 0.71 | 0.01 | 0.79 | 0.63 | 0.00 | 0.74 | 0.66 | 0.72 | 0.82 |
|
89 |
+
| myofibroblast cell | 4021 | 0.59 | 0.09 | 0.90 | 0.62 | 0.00 | 0.60 | 0.58 | 0.63 | 0.82 |
|
90 |
+
| thymic fibroblast type 2 | 3802 | 0.69 | 0.00 | 0.67 | 0.30 | 0.00 | 0.88 | 0.63 | 0.67 | 0.89 |
|
91 |
+
| mesenchymal stem cell of adipose tissue | 3413 | 0.36 | 0.00 | 0.77 | 0.48 | 0.00 | 0.48 | 0.37 | 0.42 | 0.54 |
|
92 |
+
| stromal cell | 3139 | 0.80 | 0.00 | 0.69 | 0.46 | 0.00 | 0.80 | 0.78 | 0.82 | 0.94 |
|
93 |
+
| thymic fibroblast type 1 | 2930 | 0.62 | 0.00 | 0.79 | 0.29 | 0.00 | 0.85 | 0.59 | 0.55 | 0.87 |
|
94 |
+
| ventricular cardiac muscle cell | 2353 | 0.43 | 0.00 | 0.79 | 0.74 | 0.00 | 0.98 | 0.82 | 0.90 | 0.93 |
|
95 |
+
| fibroblast of cardiac tissue | 1751 | 0.96 | 0.26 | 0.98 | 0.46 | 0.00 | 0.93 | 0.79 | 0.74 | 0.95 |
|
96 |
+
| alveolar adventitial fibroblast | 987 | 0.82 | 0.25 | 0.74 | 0.33 | 0.00 | 0.81 | 0.60 | 0.85 | 0.94 |
|
97 |
+
| adventitial cell | 938 | 0.25 | 0.00 | 0.63 | 0.28 | 0.00 | 0.45 | 0.31 | 0.45 | 0.68 |
|
98 |
+
| theca cell | 918 | 0.65 | 0.04 | 0.92 | 0.78 | 0.00 | 0.64 | 0.76 | 0.64 | 0.81 |
|
99 |
+
| keratocyte | 883 | 0.59 | 0.01 | 0.54 | 0.16 | 0.00 | 0.46 | 0.41 | 0.47 | 0.73 |
|
100 |
+
| myometrial cell | 816 | 0.82 | 0.00 | 0.87 | 0.62 | 0.00 | 0.64 | 0.59 | 0.72 | 0.87 |
|
101 |
+
| mural cell | 557 | 0.58 | 0.42 | 0.83 | 0.43 | 0.00 | 0.60 | 0.59 | 0.60 | 0.93 |
|
102 |
+
| Mueller cell | 445 | 0.89 | 0.30 | 0.96 | 0.87 | 0.00 | 0.85 | 0.99 | 0.96 | 0.98 |
|
103 |
+
| fast muscle cell | 442 | 0.58 | 0.63 | 0.89 | 0.82 | 0.00 | 0.89 | 0.85 | 0.92 | 0.95 |
|
104 |
+
| pancreatic stellate cell | 386 | 0.39 | 0.00 | 0.83 | 0.30 | 0.00 | 0.78 | 0.80 | 0.79 | 0.81 |
|
105 |
+
| tendon cell | 380 | 0.30 | 0.02 | 0.80 | 0.43 | 0.00 | 0.31 | 0.35 | 0.40 | 0.71 |
|
106 |
+
| muscle cell | 370 | 0.77 | 0.01 | 0.89 | 0.90 | 0.00 | 0.92 | 0.98 | 0.99 | 0.99 |
|
107 |
+
| Schwann cell | 279 | 0.61 | 0.42 | 0.88 | 0.79 | 0.00 | 0.32 | 0.70 | 0.82 | 0.86 |
|
108 |
+
| melanocyte | 215 | 0.00 | 0.52 | 0.93 | 0.71 | 0.00 | 0.45 | 0.76 | 0.82 | 0.96 |
|
109 |
+
| hepatic stellate cell | 193 | 0.26 | 0.00 | 0.79 | 0.45 | 0.00 | 0.67 | 0.80 | 0.74 | 0.84 |
|
110 |
+
| bronchial smooth muscle cell | 207 | 0.00 | 0.00 | 0.59 | 0.34 | 0.00 | 0.47 | 0.47 | 0.56 | 0.76 |
|
111 |
+
| tongue muscle cell | 187 | 0.00 | 0.05 | 0.87 | 0.37 | 0.00 | 0.62 | 0.87 | 0.51 | 0.94 |
|
112 |
+
| slow muscle cell | 160 | 0.00 | 0.50 | 0.82 | 0.57 | 0.00 | 0.87 | 0.93 | 0.95 | 0.96 |
|
113 |
+
| connective tissue cell | 142 | 0.00 | 0.00 | 0.46 | 0.23 | 0.00 | 0.31 | 0.54 | 0.36 | 0.77 |
|
114 |
+
| adipocyte | 33 | 0.00 | 0.00 | 0.96 | 0.86 | 0.00 | 0.37 | 0.93 | 0.86 | 0.97 |
|
115 |
+
| glial cell | 19 | 0.00 | 0.00 | 0.79 | 0.50 | 0.00 | 0.41 | 0.41 | 0.18 | 0.61 |
|
116 |
+
| Leydig cell | 9 | 0.00 | 0.00 | 0.00 | 0.13 | 0.00 | 0.12 | 0.86 | 0.20 | 0.46 |
|
117 |
+
| mesenchymal cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.02 | 0.21 | 0.57 | 0.67 |
|
118 |
|
119 |
</details>
|
120 |
|