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README.md
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@@ -5,7 +5,8 @@ tags:
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- biology
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- genomics
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- single-cell
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- anndata_version:0.11.
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- popV
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- 'tissue: diverse'
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---
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@@ -31,43 +32,43 @@ computed on a 10% random subset of the data that was not used for training.
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| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
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| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
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| fibroblast |
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| stromal cell of ovary |
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| mesenchymal stem cell | 2267 | 0.94 | 0.74 | 0.88 | 0.
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| smooth muscle cell |
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| pericyte |
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| skeletal muscle satellite stem cell |
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| blood vessel smooth muscle cell |
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| regular atrial cardiac myocyte |
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| fibroblast of breast |
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| vascular associated smooth muscle cell |
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| myofibroblast cell |
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| thymic fibroblast type 2 |
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| mesenchymal stem cell of adipose tissue |
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| stromal cell | 289 | 0.
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| thymic fibroblast type 1 |
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| ventricular cardiac muscle cell |
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| fibroblast of cardiac tissue | 186 | 0.
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| alveolar adventitial fibroblast |
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| adventitial cell |
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| theca cell | 120 | 0.
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| keratocyte |
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| myometrial cell |
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| mural cell | 56 | 0.
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| Mueller cell | 50 | 0.
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| fast muscle cell |
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| pancreatic stellate cell | 38 | 0.
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| tendon cell | 40 | 0.
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| muscle cell |
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| Schwann cell |
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| melanocyte | 15 | 0.
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| hepatic stellate cell | 28 | 0.
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| bronchial smooth muscle cell | 12 | 0.
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| tongue muscle cell | 12 | 0.
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| slow muscle cell | 14 | 0.
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| connective tissue cell | 9 | 0.00 | 0.00 | 0.00 | 0.
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| adipocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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| glial cell | 1 | 0.00 | 0.00 | 1.00 | 0.
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| Leydig cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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| mesenchymal cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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@@ -75,45 +76,45 @@ The train accuracies are computed on the training data.
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| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
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| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
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| fibroblast |
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| stromal cell of ovary |
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| mesenchymal stem cell | 21229 | 0.94 | 0.
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| smooth muscle cell |
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| pericyte |
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| skeletal muscle satellite stem cell |
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| blood vessel smooth muscle cell |
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| regular atrial cardiac myocyte |
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| fibroblast of breast |
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| vascular associated smooth muscle cell |
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| myofibroblast cell |
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| thymic fibroblast type 2 |
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| mesenchymal stem cell of adipose tissue |
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| stromal cell | 3139 | 0.
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| thymic fibroblast type 1 |
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| ventricular cardiac muscle cell |
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| fibroblast of cardiac tissue | 1751 | 0.
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| alveolar adventitial fibroblast |
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| adventitial cell |
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| theca cell | 918 | 0.
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| keratocyte |
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| myometrial cell |
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| mural cell | 558 | 0.
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| Mueller cell | 445 | 0.
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| fast muscle cell |
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| pancreatic stellate cell | 386 | 0.
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| tendon cell | 380 | 0.
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| muscle cell |
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| Schwann cell |
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| melanocyte | 216 | 0.
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| hepatic stellate cell | 194 | 0.
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| bronchial smooth muscle cell | 207 | 0.
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| tongue muscle cell | 186 | 0.
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| slow muscle cell | 160 | 0.
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| connective tissue cell | 142 | 0.00 | 0.00 | 0.
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| adipocyte | 33 | 0.
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| glial cell | 19 | 0.00 | 0.00 | 0.
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| Leydig cell | 9 | 0.00 | 0.00 | 0.00 | 0.
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| mesenchymal cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.
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</details>
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- biology
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- genomics
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- single-cell
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+
- anndata_version:0.11.3
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+
- python_version:3.11.11
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- popV
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- 'tissue: diverse'
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---
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| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
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| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
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| fibroblast | 8268 | 0.80 | 0.79 | 0.88 | 0.70 | 0.00 | 0.66 | 0.70 | 0.73 | 0.88 |
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| stromal cell of ovary | 3521 | 0.99 | 0.93 | 0.89 | 0.71 | 0.00 | 0.74 | 0.97 | 0.97 | 0.99 |
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| mesenchymal stem cell | 2267 | 0.94 | 0.74 | 0.88 | 0.41 | 0.00 | 0.16 | 0.90 | 0.88 | 0.94 |
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| smooth muscle cell | 1800 | 0.79 | 0.66 | 0.84 | 0.72 | 0.00 | 0.70 | 0.77 | 0.79 | 0.84 |
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| pericyte | 1117 | 0.72 | 0.64 | 0.83 | 0.66 | 0.00 | 0.61 | 0.71 | 0.73 | 0.78 |
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| skeletal muscle satellite stem cell | 670 | 0.96 | 0.94 | 0.96 | 0.80 | 0.00 | 0.88 | 0.96 | 0.95 | 0.97 |
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| blood vessel smooth muscle cell | 575 | 0.84 | 0.46 | 0.92 | 0.66 | 0.00 | 0.72 | 0.89 | 0.88 | 0.93 |
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| regular atrial cardiac myocyte | 620 | 0.78 | 0.61 | 0.72 | 0.47 | 0.00 | 0.15 | 0.88 | 0.95 | 0.91 |
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| fibroblast of breast | 542 | 0.98 | 0.00 | 0.71 | 0.10 | 0.00 | 0.04 | 0.95 | 0.84 | 0.90 |
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| vascular associated smooth muscle cell | 475 | 0.74 | 0.04 | 0.65 | 0.30 | 0.00 | 0.45 | 0.65 | 0.69 | 0.74 |
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| myofibroblast cell | 417 | 0.63 | 0.32 | 0.80 | 0.35 | 0.00 | 0.31 | 0.56 | 0.64 | 0.75 |
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| thymic fibroblast type 2 | 404 | 0.66 | 0.00 | 0.45 | 0.10 | 0.00 | 0.05 | 0.63 | 0.67 | 0.45 |
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| mesenchymal stem cell of adipose tissue | 358 | 0.33 | 0.00 | 0.63 | 0.30 | 0.00 | 0.25 | 0.37 | 0.38 | 0.49 |
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| stromal cell | 289 | 0.90 | 0.02 | 0.52 | 0.27 | 0.00 | 0.33 | 0.77 | 0.81 | 0.93 |
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| thymic fibroblast type 1 | 334 | 0.60 | 0.01 | 0.62 | 0.13 | 0.00 | 0.17 | 0.58 | 0.57 | 0.60 |
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| ventricular cardiac muscle cell | 246 | 0.45 | 0.02 | 0.58 | 0.46 | 0.00 | 0.43 | 0.76 | 0.88 | 0.81 |
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| fibroblast of cardiac tissue | 186 | 0.61 | 0.57 | 0.91 | 0.08 | 0.00 | 0.29 | 0.78 | 0.71 | 0.91 |
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| alveolar adventitial fibroblast | 124 | 0.76 | 0.45 | 0.63 | 0.21 | 0.00 | 0.20 | 0.59 | 0.80 | 0.77 |
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| adventitial cell | 107 | 0.24 | 0.00 | 0.17 | 0.08 | 0.00 | 0.12 | 0.30 | 0.39 | 0.42 |
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| theca cell | 120 | 0.85 | 0.26 | 0.87 | 0.75 | 0.00 | 0.72 | 0.80 | 0.72 | 0.89 |
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| keratocyte | 87 | 0.54 | 0.02 | 0.42 | 0.09 | 0.00 | 0.20 | 0.39 | 0.45 | 0.53 |
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| myometrial cell | 102 | 0.83 | 0.00 | 0.87 | 0.53 | 0.00 | 0.51 | 0.66 | 0.69 | 0.89 |
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| mural cell | 56 | 0.69 | 0.56 | 0.73 | 0.15 | 0.00 | 0.13 | 0.48 | 0.51 | 0.85 |
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| Mueller cell | 50 | 0.98 | 0.77 | 0.93 | 0.77 | 0.00 | 0.85 | 0.97 | 0.97 | 0.99 |
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| fast muscle cell | 54 | 0.77 | 0.70 | 0.82 | 0.73 | 0.00 | 0.64 | 0.86 | 0.81 | 0.86 |
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| pancreatic stellate cell | 38 | 0.69 | 0.00 | 0.53 | 0.15 | 0.00 | 0.00 | 0.81 | 0.79 | 0.77 |
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| tendon cell | 40 | 0.50 | 0.00 | 0.48 | 0.30 | 0.00 | 0.17 | 0.34 | 0.31 | 0.71 |
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| muscle cell | 32 | 0.74 | 0.00 | 0.73 | 0.76 | 0.00 | 0.46 | 0.97 | 0.91 | 0.92 |
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| Schwann cell | 27 | 0.91 | 0.67 | 0.89 | 0.82 | 0.00 | 0.54 | 0.70 | 0.72 | 0.91 |
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| melanocyte | 15 | 0.81 | 0.65 | 0.72 | 0.77 | 0.00 | 0.30 | 0.59 | 0.77 | 0.82 |
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| hepatic stellate cell | 28 | 0.70 | 0.00 | 0.65 | 0.39 | 0.00 | 0.09 | 0.74 | 0.77 | 0.79 |
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| bronchial smooth muscle cell | 12 | 0.20 | 0.15 | 0.17 | 0.17 | 0.00 | 0.13 | 0.21 | 0.29 | 0.43 |
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| tongue muscle cell | 12 | 0.80 | 0.40 | 0.50 | 0.12 | 0.00 | 0.12 | 0.54 | 0.29 | 0.86 |
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| slow muscle cell | 14 | 0.73 | 0.44 | 0.65 | 0.22 | 0.00 | 0.60 | 0.90 | 0.90 | 0.87 |
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| connective tissue cell | 9 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.05 | 0.22 | 0.16 | 0.00 |
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| adipocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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| glial cell | 1 | 0.00 | 0.00 | 1.00 | 0.00 | 0.00 | 0.08 | 0.13 | 0.10 | 0.40 |
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| Leydig cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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| mesenchymal cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
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| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
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| fibroblast | 74874 | 0.80 | 0.71 | 0.93 | 0.80 | 0.00 | 0.84 | 0.70 | 0.74 | 0.92 |
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| stromal cell of ovary | 31482 | 0.99 | 0.45 | 0.91 | 0.80 | 0.00 | 0.97 | 0.97 | 0.97 | 0.99 |
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| mesenchymal stem cell | 21229 | 0.94 | 0.60 | 0.94 | 0.57 | 0.00 | 0.95 | 0.90 | 0.89 | 0.97 |
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| smooth muscle cell | 16589 | 0.79 | 0.60 | 0.92 | 0.82 | 0.00 | 0.84 | 0.77 | 0.80 | 0.89 |
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| pericyte | 9761 | 0.72 | 0.54 | 0.90 | 0.76 | 0.00 | 0.74 | 0.72 | 0.74 | 0.81 |
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| skeletal muscle satellite stem cell | 5498 | 0.96 | 0.93 | 0.98 | 0.89 | 0.00 | 0.96 | 0.96 | 0.95 | 0.98 |
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| blood vessel smooth muscle cell | 5412 | 0.84 | 0.13 | 0.96 | 0.79 | 0.00 | 0.95 | 0.88 | 0.88 | 0.96 |
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| regular atrial cardiac myocyte | 5191 | 0.76 | 0.22 | 0.90 | 0.87 | 0.00 | 0.98 | 0.89 | 0.94 | 0.96 |
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| fibroblast of breast | 4728 | 0.97 | 0.00 | 0.76 | 0.37 | 0.00 | 0.95 | 0.94 | 0.84 | 0.99 |
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| vascular associated smooth muscle cell | 4543 | 0.71 | 0.02 | 0.79 | 0.60 | 0.00 | 0.74 | 0.66 | 0.71 | 0.80 |
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| myofibroblast cell | 4018 | 0.66 | 0.11 | 0.91 | 0.60 | 0.00 | 0.59 | 0.59 | 0.66 | 0.84 |
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| thymic fibroblast type 2 | 3799 | 0.68 | 0.00 | 0.67 | 0.37 | 0.00 | 0.92 | 0.63 | 0.66 | 0.89 |
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| mesenchymal stem cell of adipose tissue | 3414 | 0.34 | 0.00 | 0.77 | 0.54 | 0.00 | 0.44 | 0.38 | 0.42 | 0.54 |
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| stromal cell | 3139 | 0.90 | 0.00 | 0.70 | 0.46 | 0.00 | 0.83 | 0.80 | 0.85 | 0.95 |
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| thymic fibroblast type 1 | 2935 | 0.58 | 0.00 | 0.79 | 0.32 | 0.00 | 0.84 | 0.60 | 0.57 | 0.86 |
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| ventricular cardiac muscle cell | 2352 | 0.43 | 0.00 | 0.78 | 0.79 | 0.00 | 0.98 | 0.79 | 0.88 | 0.91 |
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| fibroblast of cardiac tissue | 1751 | 0.63 | 0.28 | 0.98 | 0.48 | 0.00 | 0.92 | 0.77 | 0.70 | 0.94 |
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| alveolar adventitial fibroblast | 987 | 0.79 | 0.26 | 0.74 | 0.32 | 0.00 | 0.70 | 0.62 | 0.85 | 0.94 |
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| adventitial cell | 937 | 0.25 | 0.00 | 0.63 | 0.35 | 0.00 | 0.49 | 0.28 | 0.41 | 0.68 |
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| theca cell | 918 | 0.86 | 0.01 | 0.92 | 0.86 | 0.00 | 0.67 | 0.75 | 0.66 | 0.90 |
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| keratocyte | 887 | 0.56 | 0.00 | 0.55 | 0.24 | 0.00 | 0.59 | 0.41 | 0.48 | 0.69 |
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| myometrial cell | 815 | 0.79 | 0.00 | 0.87 | 0.74 | 0.00 | 0.72 | 0.62 | 0.70 | 0.86 |
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| mural cell | 558 | 0.66 | 0.41 | 0.83 | 0.42 | 0.00 | 0.72 | 0.53 | 0.56 | 0.93 |
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| Mueller cell | 445 | 0.99 | 0.42 | 0.95 | 0.91 | 0.00 | 0.81 | 0.98 | 0.97 | 0.99 |
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| fast muscle cell | 441 | 0.79 | 0.61 | 0.90 | 0.83 | 0.00 | 0.85 | 0.87 | 0.90 | 0.93 |
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| pancreatic stellate cell | 386 | 0.61 | 0.00 | 0.83 | 0.41 | 0.00 | 0.53 | 0.80 | 0.78 | 0.80 |
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| tendon cell | 380 | 0.56 | 0.00 | 0.80 | 0.55 | 0.00 | 0.36 | 0.36 | 0.41 | 0.77 |
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| muscle cell | 374 | 0.78 | 0.01 | 0.91 | 0.90 | 0.00 | 0.91 | 0.99 | 0.99 | 0.98 |
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| Schwann cell | 285 | 0.71 | 0.40 | 0.86 | 0.77 | 0.00 | 0.83 | 0.81 | 0.79 | 0.91 |
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| melanocyte | 216 | 0.64 | 0.56 | 0.92 | 0.78 | 0.00 | 0.57 | 0.73 | 0.77 | 0.95 |
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| hepatic stellate cell | 194 | 0.66 | 0.00 | 0.81 | 0.56 | 0.00 | 0.87 | 0.73 | 0.71 | 0.83 |
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| bronchial smooth muscle cell | 207 | 0.40 | 0.01 | 0.62 | 0.38 | 0.00 | 0.39 | 0.41 | 0.55 | 0.69 |
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| tongue muscle cell | 186 | 0.73 | 0.07 | 0.87 | 0.48 | 0.00 | 0.61 | 0.78 | 0.50 | 0.96 |
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| slow muscle cell | 160 | 0.75 | 0.37 | 0.82 | 0.64 | 0.00 | 0.65 | 0.96 | 0.96 | 0.97 |
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| connective tissue cell | 142 | 0.00 | 0.00 | 0.51 | 0.27 | 0.00 | 0.42 | 0.37 | 0.28 | 0.72 |
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| adipocyte | 33 | 0.78 | 0.00 | 0.96 | 0.63 | 0.00 | 0.23 | 0.96 | 0.88 | 0.99 |
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| glial cell | 19 | 0.00 | 0.00 | 0.73 | 0.47 | 0.00 | 0.29 | 0.27 | 0.20 | 0.54 |
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| Leydig cell | 9 | 0.00 | 0.00 | 0.00 | 0.25 | 0.00 | 0.11 | 0.90 | 0.42 | 0.88 |
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| mesenchymal cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.04 | 0.31 | 0.50 | 0.67 |
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</details>
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