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@@ -33,3 +33,4 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
 *.zip filter=lfs diff=lfs merge=lfs -text
 *.zst filter=lfs diff=lfs merge=lfs -text
 *tfevents* filter=lfs diff=lfs merge=lfs -text
+OnClass.data-00000-of-00001 filter=lfs diff=lfs merge=lfs -text

OnClass.data-00000-of-00001

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OnClass.npz

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accuracies.json

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+{
+    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| fibroblast | 416 | 0.97 | 0.98 | 0.98 | 0.98 | 0.00 | 0.97 | 0.98 | 0.97 | 0.98 |\n| macrophage | 317 | 0.95 | 0.97 | 0.96 | 0.96 | 0.00 | 0.95 | 0.96 | 0.97 | 0.98 |\n| T cell | 264 | 0.68 | 0.77 | 0.69 | 0.70 | 0.00 | 0.77 | 0.75 | 0.79 | 0.83 |\n| endothelial cell | 195 | 0.98 | 0.98 | 0.98 | 0.98 | 0.00 | 0.98 | 0.98 | 0.98 | 0.98 |\n| mast cell | 218 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |\n| CD8-positive, alpha-beta T cell | 117 | 0.63 | 0.65 | 0.56 | 0.41 | 0.00 | 0.71 | 0.79 | 0.88 | 0.77 |\n| smooth muscle cell | 59 | 0.86 | 0.90 | 0.90 | 0.91 | 0.00 | 0.88 | 0.86 | 0.84 | 0.86 |\n| CD4-positive, alpha-beta T cell | 36 | 0.30 | 0.09 | 0.08 | 0.14 | 0.00 | 0.24 | 0.33 | 0.22 | 0.32 |\n| neutrophil | 37 | 0.89 | 0.97 | 0.96 | 0.96 | 0.00 | 0.95 | 0.96 | 0.93 | 0.96 |\n| regulatory T cell | 28 | 0.70 | 0.63 | 0.64 | 0.58 | 0.00 | 0.61 | 0.55 | 0.62 | 0.72 |\n| sebum secreting cell | 13 | 0.86 | 0.86 | 0.89 | 0.92 | 0.00 | 0.89 | 0.89 | 0.89 | 0.89 |\n| myeloid dendritic cell | 19 | 0.71 | 0.59 | 0.60 | 0.50 | 0.00 | 0.62 | 0.73 | 0.70 | 0.80 |\n| melanocyte | 18 | 0.78 | 0.80 | 0.83 | 0.79 | 0.00 | 0.81 | 0.78 | 0.80 | 0.81 |\n| plasma cell | 10 | 0.80 | 0.90 | 0.89 | 0.46 | 0.00 | 0.86 | 0.95 | 0.95 | 0.95 |\n| Langerhans cell | 10 | 0.64 | 0.50 | 0.47 | 0.60 | 0.00 | 0.46 | 0.65 | 0.69 | 0.72 |\n| natural killer cell | 4 | 0.75 | 0.00 | 0.25 | 0.00 | 0.00 | 0.29 | 0.40 | 0.22 | 0.57 |\n| mature NK T cell | 4 | 0.00 | 0.00 | 0.00 | 0.40 | 0.00 | 0.22 | 0.00 | 0.00 | 0.00 |\n| keratocyte | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.57 | 0.80 | 1.00 | 0.00 |\n| basophil | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| epithelial cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| B cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| erythrocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| stromal cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| muscle cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| activated CD4-positive, alpha-beta T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
+    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| fibroblast | 3713 | 0.98 | 0.97 | 0.98 | 0.98 | 0.00 | 0.97 | 0.98 | 0.98 | 0.98 |\n| macrophage | 2999 | 0.96 | 0.96 | 0.98 | 0.98 | 0.00 | 0.95 | 0.97 | 0.98 | 0.98 |\n| T cell | 2372 | 0.68 | 0.75 | 0.81 | 0.78 | 0.00 | 0.79 | 0.80 | 0.89 | 0.87 |\n| endothelial cell | 1880 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |\n| mast cell | 1783 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |\n| CD8-positive, alpha-beta T cell | 1414 | 0.69 | 0.71 | 0.78 | 0.63 | 0.00 | 0.76 | 0.89 | 0.94 | 0.87 |\n| smooth muscle cell | 445 | 0.85 | 0.86 | 0.89 | 0.89 | 0.00 | 0.85 | 0.89 | 0.88 | 0.87 |\n| CD4-positive, alpha-beta T cell | 329 | 0.26 | 0.10 | 0.41 | 0.35 | 0.00 | 0.49 | 0.58 | 0.69 | 0.70 |\n| neutrophil | 253 | 0.92 | 0.99 | 0.99 | 0.98 | 0.00 | 0.97 | 0.99 | 0.97 | 0.99 |\n| regulatory T cell | 245 | 0.65 | 0.57 | 0.73 | 0.51 | 0.00 | 0.77 | 0.83 | 0.87 | 0.84 |\n| sebum secreting cell | 122 | 0.88 | 0.87 | 0.89 | 0.90 | 0.00 | 0.94 | 0.97 | 0.97 | 0.91 |\n| myeloid dendritic cell | 89 | 0.45 | 0.28 | 0.55 | 0.66 | 0.00 | 0.68 | 0.74 | 0.82 | 0.78 |\n| melanocyte | 88 | 0.82 | 0.82 | 0.86 | 0.84 | 0.00 | 0.89 | 0.97 | 0.93 | 0.89 |\n| plasma cell | 76 | 0.79 | 0.94 | 0.99 | 0.68 | 0.00 | 0.89 | 0.98 | 0.98 | 0.98 |\n| Langerhans cell | 66 | 0.54 | 0.45 | 0.74 | 0.55 | 0.00 | 0.53 | 0.75 | 0.80 | 0.78 |\n| natural killer cell | 60 | 0.46 | 0.00 | 0.44 | 0.19 | 0.00 | 0.67 | 0.74 | 0.83 | 0.79 |\n| mature NK T cell | 29 | 0.15 | 0.00 | 0.40 | 0.00 | 0.00 | 0.63 | 0.94 | 0.92 | 0.82 |\n| keratocyte | 12 | 0.42 | 0.00 | 0.92 | 0.74 | 0.00 | 0.62 | 1.00 | 0.96 | 1.00 |\n| basophil | 7 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.83 | 0.88 | 1.00 | 0.00 |\n| epithelial cell | 7 | 0.00 | 0.00 | 0.00 | 0.46 | 0.00 | 0.64 | 0.93 | 1.00 | 0.60 |\n| B cell | 7 | 0.00 | 0.18 | 1.00 | 0.86 | 0.00 | 0.88 | 1.00 | 0.93 | 1.00 |\n| erythrocyte | 5 | 0.00 | 0.00 | 1.00 | 1.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| stromal cell | 4 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.36 | 1.00 | 0.80 | 1.00 |\n| muscle cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.67 | 1.00 | 1.00 | 1.00 |\n| activated CD4-positive, alpha-beta T cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.22 | 1.00 | 1.00 | 1.00 |"
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checkpoint

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scanvi/model.pt

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scvi/model.pt

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