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tabula_sapiens_Skin

Joblib
popV
biology
genomics
single-cell
anndata_version:0.11.3
python_version:3.11.11
tissue: Skin
Model card Files Community
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@@ -32,26 +32,26 @@ computed on a 10% random subset of the data that was not used for training.
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  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
34
  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
35
- | fibroblast | 407 | 0.98 | 0.98 | 0.98 | 0.98 | 0.00 | 0.98 | 0.98 | 0.98 | 0.98 |
36
- | macrophage | 335 | 0.96 | 0.97 | 0.96 | 0.96 | 0.00 | 0.94 | 0.96 | 0.96 | 0.98 |
37
- | T cell | 261 | 0.73 | 0.77 | 0.72 | 0.66 | 0.00 | 0.70 | 0.67 | 0.82 | 0.82 |
38
- | endothelial cell | 200 | 0.99 | 0.98 | 0.98 | 0.98 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |
39
- | mast cell | 220 | 0.99 | 0.99 | 0.98 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |
40
- | CD8-positive, alpha-beta T cell | 129 | 0.66 | 0.71 | 0.62 | 0.38 | 0.00 | 0.68 | 0.82 | 0.90 | 0.76 |
41
- | smooth muscle cell | 55 | 0.86 | 0.91 | 0.88 | 0.88 | 0.00 | 0.87 | 0.86 | 0.85 | 0.87 |
42
- | CD4-positive, alpha-beta T cell | 34 | 0.27 | 0.08 | 0.14 | 0.10 | 0.00 | 0.25 | 0.25 | 0.29 | 0.36 |
43
- | neutrophil | 29 | 0.95 | 0.98 | 0.97 | 0.92 | 0.00 | 0.91 | 0.95 | 0.91 | 0.95 |
44
- | regulatory T cell | 25 | 0.63 | 0.68 | 0.42 | 0.06 | 0.00 | 0.55 | 0.52 | 0.66 | 0.68 |
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- | sebum secreting cell | 13 | 0.79 | 0.81 | 0.87 | 0.87 | 0.00 | 0.81 | 0.90 | 0.80 | 0.84 |
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- | myeloid dendritic cell | 16 | 0.67 | 0.69 | 0.61 | 0.50 | 0.00 | 0.51 | 0.73 | 0.68 | 0.83 |
47
- | melanocyte | 14 | 0.81 | 0.81 | 0.86 | 0.81 | 0.00 | 0.79 | 0.79 | 0.67 | 0.81 |
48
- | plasma cell | 10 | 0.95 | 1.00 | 0.95 | 0.86 | 0.00 | 0.87 | 0.95 | 1.00 | 1.00 |
49
- | Langerhans cell | 10 | 0.67 | 0.47 | 0.40 | 0.78 | 0.00 | 0.49 | 0.74 | 0.64 | 0.75 |
50
- | natural killer cell | 3 | 0.50 | 0.00 | 0.00 | 0.50 | 0.00 | 0.25 | 0.40 | 0.40 | 0.57 |
51
- | mature NK T cell | 4 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.22 | 0.29 | 0.29 | 0.00 |
52
- | keratocyte | 2 | 0.00 | 0.00 | 1.00 | 0.00 | 0.00 | 1.00 | 1.00 | 0.67 | 0.67 |
53
- | basophil | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.40 | 0.00 | 0.00 | 0.00 |
54
- | epithelial cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.67 | 1.00 | 0.00 | 0.00 |
55
  | B cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
56
  | erythrocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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  | stromal cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
@@ -62,31 +62,31 @@ The train accuracies are computed on the training data.
62
 
63
  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
64
  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
65
- | fibroblast | 3722 | 0.97 | 0.97 | 0.98 | 0.98 | 0.00 | 0.98 | 0.98 | 0.98 | 0.98 |
66
- | macrophage | 2981 | 0.95 | 0.97 | 0.98 | 0.98 | 0.00 | 0.95 | 0.97 | 0.98 | 0.98 |
67
- | T cell | 2375 | 0.70 | 0.74 | 0.81 | 0.79 | 0.00 | 0.75 | 0.80 | 0.88 | 0.88 |
68
  | endothelial cell | 1875 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.99 | 1.00 | 0.99 | 0.99 |
69
- | mast cell | 1781 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.98 | 0.99 | 0.99 | 0.99 |
70
- | CD8-positive, alpha-beta T cell | 1402 | 0.69 | 0.70 | 0.77 | 0.63 | 0.00 | 0.76 | 0.89 | 0.94 | 0.87 |
71
- | smooth muscle cell | 449 | 0.84 | 0.87 | 0.88 | 0.88 | 0.00 | 0.89 | 0.88 | 0.88 | 0.87 |
72
- | CD4-positive, alpha-beta T cell | 331 | 0.20 | 0.09 | 0.40 | 0.38 | 0.00 | 0.43 | 0.59 | 0.67 | 0.70 |
73
- | neutrophil | 261 | 0.99 | 1.00 | 0.99 | 0.97 | 0.00 | 0.94 | 0.98 | 0.97 | 0.99 |
74
- | regulatory T cell | 248 | 0.61 | 0.60 | 0.74 | 0.37 | 0.00 | 0.78 | 0.83 | 0.84 | 0.84 |
75
- | sebum secreting cell | 122 | 0.83 | 0.89 | 0.91 | 0.89 | 0.00 | 0.87 | 0.97 | 0.98 | 0.93 |
76
- | myeloid dendritic cell | 92 | 0.45 | 0.37 | 0.63 | 0.71 | 0.00 | 0.65 | 0.70 | 0.81 | 0.74 |
77
- | melanocyte | 92 | 0.81 | 0.81 | 0.86 | 0.77 | 0.00 | 0.83 | 0.98 | 0.94 | 0.91 |
78
- | plasma cell | 76 | 0.97 | 0.94 | 1.00 | 0.90 | 0.00 | 0.88 | 0.98 | 0.99 | 0.99 |
79
- | Langerhans cell | 66 | 0.52 | 0.50 | 0.73 | 0.70 | 0.00 | 0.53 | 0.66 | 0.80 | 0.75 |
80
- | natural killer cell | 61 | 0.46 | 0.07 | 0.49 | 0.45 | 0.00 | 0.70 | 0.75 | 0.81 | 0.80 |
81
- | mature NK T cell | 29 | 0.00 | 0.00 | 0.40 | 0.11 | 0.00 | 0.63 | 0.85 | 0.84 | 0.91 |
82
- | keratocyte | 12 | 0.00 | 0.00 | 0.96 | 0.70 | 0.00 | 0.50 | 1.00 | 0.96 | 1.00 |
83
- | basophil | 7 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.19 | 1.00 | 1.00 | 0.00 |
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- | epithelial cell | 7 | 0.00 | 0.00 | 0.00 | 0.36 | 0.00 | 0.74 | 0.88 | 1.00 | 0.73 |
85
- | B cell | 7 | 0.00 | 0.00 | 0.92 | 0.73 | 0.00 | 0.78 | 1.00 | 0.88 | 1.00 |
86
- | erythrocyte | 5 | 0.00 | 0.00 | 1.00 | 1.00 | 0.00 | 0.91 | 1.00 | 1.00 | 1.00 |
87
- | stromal cell | 4 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.29 | 1.00 | 1.00 | 0.86 |
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- | muscle cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.29 | 1.00 | 1.00 | 1.00 |
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- | activated CD4-positive, alpha-beta T cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 |
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91
  </details>
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32
 
33
  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
34
  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
35
+ | fibroblast | 421 | 0.98 | 0.98 | 0.98 | 0.98 | 0.00 | 0.98 | 0.98 | 0.98 | 0.98 |
36
+ | macrophage | 325 | 0.96 | 0.97 | 0.96 | 0.95 | 0.00 | 0.92 | 0.96 | 0.96 | 0.97 |
37
+ | T cell | 255 | 0.68 | 0.77 | 0.71 | 0.67 | 0.00 | 0.72 | 0.73 | 0.81 | 0.82 |
38
+ | endothelial cell | 199 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.98 | 0.99 |
39
+ | mast cell | 226 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.98 | 0.99 | 0.99 | 0.99 |
40
+ | CD8-positive, alpha-beta T cell | 133 | 0.67 | 0.72 | 0.66 | 0.50 | 0.00 | 0.75 | 0.83 | 0.90 | 0.82 |
41
+ | smooth muscle cell | 52 | 0.85 | 0.89 | 0.88 | 0.83 | 0.00 | 0.88 | 0.85 | 0.83 | 0.86 |
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+ | CD4-positive, alpha-beta T cell | 33 | 0.27 | 0.17 | 0.06 | 0.03 | 0.00 | 0.22 | 0.26 | 0.22 | 0.28 |
43
+ | neutrophil | 31 | 0.95 | 0.97 | 0.98 | 0.80 | 0.00 | 0.90 | 0.95 | 0.91 | 0.95 |
44
+ | regulatory T cell | 22 | 0.59 | 0.62 | 0.44 | 0.13 | 0.00 | 0.49 | 0.42 | 0.64 | 0.54 |
45
+ | sebum secreting cell | 13 | 0.75 | 0.83 | 0.83 | 0.83 | 0.00 | 0.92 | 0.92 | 0.85 | 0.86 |
46
+ | myeloid dendritic cell | 16 | 0.73 | 0.60 | 0.51 | 0.57 | 0.00 | 0.54 | 0.74 | 0.72 | 0.81 |
47
+ | melanocyte | 15 | 0.81 | 0.84 | 0.84 | 0.77 | 0.00 | 0.82 | 0.79 | 0.73 | 0.81 |
48
+ | plasma cell | 10 | 0.78 | 0.95 | 0.89 | 0.40 | 0.00 | 0.82 | 0.95 | 0.95 | 0.95 |
49
+ | Langerhans cell | 8 | 0.60 | 0.50 | 0.46 | 0.57 | 0.00 | 0.42 | 0.64 | 0.61 | 0.67 |
50
+ | natural killer cell | 3 | 0.40 | 0.00 | 0.00 | 0.33 | 0.00 | 0.18 | 0.40 | 0.40 | 0.40 |
51
+ | mature NK T cell | 5 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.17 | 0.00 | 0.00 | 0.00 |
52
+ | keratocyte | 2 | 0.00 | 0.00 | 0.00 | 1.00 | 0.00 | 0.50 | 1.00 | 0.67 | 1.00 |
53
+ | basophil | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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+ | epithelial cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
55
  | B cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
56
  | erythrocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
57
  | stromal cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
 
62
 
63
  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
64
  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
65
+ | fibroblast | 3709 | 0.98 | 0.97 | 0.99 | 0.98 | 0.00 | 0.97 | 0.98 | 0.98 | 0.98 |
66
+ | macrophage | 2992 | 0.96 | 0.96 | 0.98 | 0.97 | 0.00 | 0.94 | 0.97 | 0.98 | 0.98 |
67
+ | T cell | 2381 | 0.68 | 0.75 | 0.81 | 0.78 | 0.00 | 0.79 | 0.80 | 0.88 | 0.87 |
68
  | endothelial cell | 1875 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.99 | 1.00 | 0.99 | 0.99 |
69
+ | mast cell | 1775 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.98 | 0.99 | 0.99 | 0.99 |
70
+ | CD8-positive, alpha-beta T cell | 1398 | 0.69 | 0.72 | 0.78 | 0.65 | 0.00 | 0.81 | 0.88 | 0.94 | 0.88 |
71
+ | smooth muscle cell | 452 | 0.85 | 0.86 | 0.89 | 0.87 | 0.00 | 0.86 | 0.89 | 0.88 | 0.87 |
72
+ | CD4-positive, alpha-beta T cell | 332 | 0.25 | 0.11 | 0.41 | 0.33 | 0.00 | 0.49 | 0.59 | 0.66 | 0.68 |
73
+ | neutrophil | 259 | 0.99 | 1.00 | 0.99 | 0.89 | 0.00 | 0.96 | 0.99 | 0.97 | 0.99 |
74
+ | regulatory T cell | 251 | 0.62 | 0.60 | 0.72 | 0.37 | 0.00 | 0.79 | 0.85 | 0.84 | 0.83 |
75
+ | sebum secreting cell | 122 | 0.83 | 0.87 | 0.90 | 0.92 | 0.00 | 0.96 | 0.98 | 0.98 | 0.93 |
76
+ | myeloid dendritic cell | 92 | 0.47 | 0.35 | 0.61 | 0.69 | 0.00 | 0.61 | 0.75 | 0.80 | 0.75 |
77
+ | melanocyte | 91 | 0.83 | 0.80 | 0.85 | 0.81 | 0.00 | 0.87 | 0.97 | 0.95 | 0.91 |
78
+ | plasma cell | 76 | 0.78 | 0.95 | 1.00 | 0.64 | 0.00 | 0.83 | 0.99 | 0.98 | 0.99 |
79
+ | Langerhans cell | 68 | 0.50 | 0.50 | 0.74 | 0.60 | 0.00 | 0.48 | 0.70 | 0.81 | 0.80 |
80
+ | natural killer cell | 61 | 0.41 | 0.08 | 0.47 | 0.29 | 0.00 | 0.61 | 0.82 | 0.84 | 0.80 |
81
+ | mature NK T cell | 28 | 0.00 | 0.00 | 0.23 | 0.32 | 0.00 | 0.56 | 0.93 | 0.81 | 0.81 |
82
+ | keratocyte | 12 | 0.00 | 0.00 | 0.92 | 0.64 | 0.00 | 0.69 | 1.00 | 0.96 | 1.00 |
83
+ | basophil | 7 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.30 | 1.00 | 1.00 | 0.00 |
84
+ | epithelial cell | 8 | 0.00 | 0.00 | 0.00 | 0.53 | 0.00 | 0.73 | 0.89 | 1.00 | 0.86 |
85
+ | B cell | 7 | 0.00 | 0.20 | 0.86 | 0.62 | 0.00 | 0.56 | 1.00 | 0.93 | 1.00 |
86
+ | erythrocyte | 5 | 0.00 | 0.00 | 1.00 | 1.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |
87
+ | stromal cell | 4 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.36 | 1.00 | 0.89 | 1.00 |
88
+ | muscle cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.50 | 1.00 | 1.00 | 1.00 |
89
+ | activated CD4-positive, alpha-beta T cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.67 | 1.00 | 1.00 | 1.00 |
90
 
91
  </details>
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